Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HUT19_RS07420 Genome accession   NZ_CP054916
Coordinates   1817005..1818378 (-) Length   457 a.a.
NCBI ID   WP_176179692.1    Uniprot ID   -
Organism   Streptomyces sp. NA02950     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1812005..1823378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT19_RS07400 (HUT19_07400) - 1814408..1814725 (-) 318 WP_176179688.1 DUF6167 family protein -
  HUT19_RS07405 (HUT19_07405) - 1814734..1815174 (-) 441 WP_176179689.1 DUF948 domain-containing protein -
  HUT19_RS07410 (HUT19_07410) rpsD 1815429..1816040 (-) 612 WP_176179690.1 30S ribosomal protein S4 -
  HUT19_RS07415 (HUT19_07415) - 1816234..1816977 (+) 744 WP_254885474.1 DUF2470 domain-containing protein -
  HUT19_RS07420 (HUT19_07420) rarA 1817005..1818378 (-) 1374 WP_176179692.1 replication-associated recombination protein A Machinery gene
  HUT19_RS07425 (HUT19_07425) - 1818441..1819097 (-) 657 WP_176179693.1 vitamin K epoxide reductase family protein -
  HUT19_RS07430 (HUT19_07430) - 1819281..1820159 (+) 879 WP_176179694.1 ABC transporter ATP-binding protein -
  HUT19_RS07435 (HUT19_07435) - 1820156..1820995 (+) 840 WP_176179695.1 ABC transporter permease -
  HUT19_RS07440 (HUT19_07440) - 1820953..1822221 (+) 1269 WP_176179696.1 sensor histidine kinase -
  HUT19_RS07445 (HUT19_07445) vraR 1822218..1822838 (+) 621 WP_176179697.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48378.92 Da        Isoelectric Point: 6.5853

>NTDB_id=401994 HUT19_RS07420 WP_176179692.1 1817005..1818378(-) (rarA) [Streptomyces sp. NA02950]
MEPDLFTAAAEERQEKDPASSPLAVRMRPRTLDEVVGQQHLLRPGSPLRRLVGEGNGGPAGPSSVILWGPPGIGKTTLAY
VVSQATQKRFVELSAITAGVKEVRAVIDGARRSSGAYGRETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDEDLRGLLSRALADERGLGGAVALPREAEAHLLRIAGGDARRALTALEAGAGSAIAKGEAE
ITLTTLEEAVDRAAVKYDRAGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVALIGFPEAALTLSHATIALALAPKSNAATTAIGAALADVRAGLAGPVPPHLRDGHYKGAEKLGHAQGYLY
PHDLPGGIAAQQYAPDKIHGKRYYEPTRYGAEARYADVVERVRARLRGDAPPAPDAS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=401994 HUT19_RS07420 WP_176179692.1 1817005..1818378(-) (rarA) [Streptomyces sp. NA02950]
GTGGAGCCAGACCTGTTCACCGCCGCCGCCGAGGAACGCCAGGAGAAGGACCCCGCCAGCAGTCCGCTGGCGGTGCGCAT
GCGCCCGCGCACGCTGGACGAGGTGGTGGGCCAGCAGCATCTGCTGCGGCCCGGATCCCCGTTGCGCCGACTGGTCGGTG
AGGGCAATGGGGGACCGGCCGGGCCGTCGTCGGTGATCCTGTGGGGGCCGCCGGGGATCGGCAAGACCACCCTGGCGTAT
GTGGTCAGCCAGGCCACCCAGAAGCGCTTTGTGGAGCTGTCGGCGATCACCGCGGGCGTCAAGGAGGTGCGGGCCGTCAT
CGACGGGGCGCGCCGGTCCTCCGGGGCGTACGGCCGGGAGACGGTGCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTGCCCGCCGTCGAGAACCGCTGGGTGACGCTGATCGCCGCCACCACCGAGAATCCGTACTTT
TCGGTGATCTCCCCGCTGCTGTCCCGTTCGCTGCTGCTCACCCTCGAGCCGCTGACCGACGAGGATCTGCGCGGGCTGCT
GAGCCGGGCGCTGGCCGACGAGCGCGGGCTCGGGGGCGCGGTCGCCCTGCCCCGGGAGGCCGAGGCGCATCTGCTGCGGA
TCGCGGGCGGTGACGCCCGGCGCGCGCTGACCGCGCTGGAGGCGGGGGCGGGTTCGGCGATAGCCAAGGGCGAGGCCGAG
ATCACGCTGACCACGCTGGAGGAGGCGGTCGACCGCGCCGCGGTGAAGTACGACCGCGCGGGCGATCAGCACTACGACGT
GGCGAGCGCCCTCATCAAGTCCATCCGCGGTTCGGACGTGGACGCGGCGCTGCACTACCTGGCGCGGATGATCGAGGCGG
GGGAGGACCCGCGGTTCATCGCCCGGCGGCTGATGATCTCGGCGAGCGAGGACATCGGCCTTGCCGATCCCACCGCGCTG
CCCACCGCCGTGGCGGCGGCGCAGGCGGTCGCGCTGATCGGCTTCCCCGAGGCCGCGCTCACCCTCAGCCACGCCACCAT
CGCGCTGGCCCTCGCGCCCAAGTCCAACGCCGCCACCACGGCGATCGGCGCGGCGCTGGCGGACGTACGGGCGGGGCTCG
CCGGGCCGGTGCCGCCGCATCTGCGCGACGGCCACTACAAGGGCGCGGAGAAGCTGGGCCACGCCCAGGGCTATCTGTAT
CCGCACGACCTCCCGGGCGGGATCGCCGCGCAGCAGTACGCCCCGGACAAGATCCACGGCAAGCGCTACTACGAGCCGAC
GCGCTACGGGGCGGAGGCGCGTTACGCCGATGTGGTCGAGCGGGTGCGCGCCCGGCTGCGCGGCGACGCGCCCCCCGCAC
CGGATGCGTCGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(200-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-442)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

46.047

94.092

0.433