Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GLX29_RS07545 Genome accession   NZ_CP046251
Coordinates   1632231..1632857 (+) Length   208 a.a.
NCBI ID   WP_144884053.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain P12375     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1627231..1637857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLX29_RS07525 (GLX29_07525) - 1627625..1629385 (-) 1761 WP_059308345.1 AAA family ATPase -
  GLX29_RS07530 (GLX29_07530) matP 1629572..1630027 (+) 456 WP_032617400.1 macrodomain Ter protein MatP -
  GLX29_RS07535 (GLX29_07535) ompA 1630094..1631149 (-) 1056 WP_103792031.1 porin OmpA -
  GLX29_RS07540 (GLX29_07540) sulA 1631504..1632013 (-) 510 WP_032617403.1 SOS-induced cell division inhibitor SulA -
  GLX29_RS07545 (GLX29_07545) sxy/tfoX 1632231..1632857 (+) 627 WP_144884053.1 TfoX/Sxy family DNA transformation protein Regulator
  GLX29_RS07550 (GLX29_07550) yccS 1632842..1634977 (-) 2136 WP_155166538.1 YccS family putative transporter -
  GLX29_RS07555 (GLX29_07555) - 1634996..1635442 (-) 447 WP_032617407.1 YccF domain-containing protein -
  GLX29_RS07560 (GLX29_07560) helD 1635566..1637620 (+) 2055 WP_155166539.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23894.43 Da        Isoelectric Point: 9.1279

>NTDB_id=401985 GLX29_RS07545 WP_144884053.1 1632231..1632857(+) (sxy/tfoX) [Leclercia adecarboxylata strain P12375]
MKKLSYERIYQSTKYLSPLGEVQHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAPYCAKNTTSYLTLMKRGRSVLLN
YYRVDEALWQDQNKLLQLSSLALEAARRERRERYKRDRLKDLPNLNFQLEILLNEAGITNEAALRALGAEQSWLKIRALN
KHLSYKVLFALEGAIVGLHEAALPELRRRELVEWYKTLPVENSPHSGS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=401985 GLX29_RS07545 WP_144884053.1 1632231..1632857(+) (sxy/tfoX) [Leclercia adecarboxylata strain P12375]
ATGAAAAAGTTATCCTACGAGCGGATCTATCAATCCACGAAATATCTTTCACCCCTCGGAGAGGTCCAGCATCGCGCCCT
GTTTGGCGGATACACATTGGCGGTGGATGACGCAGTCTTTGCGATGGTGTCAGATGGGGAGTTGTACCTGCGTGCCTGTG
AAGAGAGCGCACCGTATTGCGCCAAAAATACCACTTCTTACCTGACGCTGATGAAGCGGGGGCGCTCGGTATTGCTGAAT
TATTACCGTGTCGATGAGGCGCTCTGGCAGGATCAGAATAAGCTTTTACAGCTCTCTTCACTTGCACTTGAAGCAGCGCG
GCGGGAACGTCGCGAGCGGTACAAACGCGACAGGCTGAAAGATTTACCCAATCTCAACTTTCAGCTTGAGATTCTGCTGA
ATGAGGCGGGCATCACCAACGAAGCAGCATTACGCGCCCTCGGTGCTGAGCAGAGCTGGCTAAAGATCAGAGCGCTTAAC
AAGCACCTGAGTTACAAAGTGCTGTTTGCGCTGGAGGGGGCAATAGTGGGGCTGCATGAAGCAGCGCTCCCGGAGCTCAG
GCGCCGGGAGCTGGTGGAGTGGTACAAAACGCTGCCGGTAGAGAACAGTCCTCACTCCGGCAGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.049

98.558

0.572

Multiple sequence alignment