Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GK107_RS11605 Genome accession   NZ_CP046250
Coordinates   2284445..2286166 (-) Length   573 a.a.
NCBI ID   WP_011231871.1    Uniprot ID   Q75TB4
Organism   Geobacillus thermoleovorans strain V0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2279445..2291166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK107_RS11580 (GK107_11390) - 2280207..2280455 (+) 249 WP_011231866.1 DUF2627 domain-containing protein -
  GK107_RS11585 (GK107_11395) - 2280531..2281259 (-) 729 WP_011231867.1 glycerophosphodiester phosphodiesterase -
  GK107_RS11590 (GK107_11400) - 2281369..2281521 (+) 153 WP_011231868.1 YycC family protein -
  GK107_RS11595 (GK107_11405) spo0A 2281673..2282491 (-) 819 WP_025038882.1 sporulation transcription factor Spo0A -
  GK107_RS11600 (GK107_11410) spoIVB 2282876..2284171 (-) 1296 WP_011231870.1 SpoIVB peptidase -
  GK107_RS11605 (GK107_11415) recN 2284445..2286166 (-) 1722 WP_011231871.1 DNA repair protein RecN Machinery gene
  GK107_RS11610 (GK107_11420) ahrC 2286293..2286742 (-) 450 WP_011231872.1 transcriptional regulator AhrC/ArgR -
  GK107_RS11615 (GK107_11425) - 2286799..2287647 (-) 849 WP_318538297.1 TlyA family RNA methyltransferase -
  GK107_RS11620 (GK107_11430) dxs 2287651..2289543 (-) 1893 WP_033004878.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GK107_RS11625 (GK107_11435) - 2289792..2290685 (-) 894 WP_318538298.1 polyprenyl synthetase family protein -
  GK107_RS11630 (GK107_11440) - 2290689..2290919 (-) 231 WP_012820585.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64295.59 Da        Isoelectric Point: 4.9678

>NTDB_id=401960 GK107_RS11605 WP_011231871.1 2284445..2286166(-) (recN) [Geobacillus thermoleovorans strain V0]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQK
CADVGIDASDGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEAL
ARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSG
EGRGLDSIGEAMRHLDDVAGMDAALKDAHETTANCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGAT
IADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYARRLIERIHQELKDLYMDKTKFDIVFA
KREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQGVTSIVFDEVDTGVS
GRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRH
AKELLELAAKMKH

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=401960 GK107_RS11605 WP_011231871.1 2284445..2286166(-) (recN) [Geobacillus thermoleovorans strain V0]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCCATTATCGAGTCGCTCTCGTTGTCGTTTGACAAAGGGCTGACGGTGTT
AACCGGCGAAACGGGAGCCGGCAAATCGATCATCATCGACGCGATTCATTTGTTGATCGGCGGACGCGGCTCCGCTGAAT
TTGTCCGCTTTGGAGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCATCCGTGCTGGCAAAAA
TGCGCAGACGTTGGCATCGACGCCAGCGACGGCATGATCGTGTTGCGCCGCGATATTTTCGCCAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTCGTCACGACGGCGGTGCTGCGCGACATCGGGGCGACGCTTGTTGATATTCACGGCCAGCATG
AACATCAAGAACTGATGGATCCGTCCCGCCATCTGCCGCTTTTAGACGAGTTCGGCGGCCTAGAGGCGGCAGAGGCGCTT
GCTCGCTACCGCGCCGTCTACGAGCGGTATGAGGAGCTCGGAAACAAATTGAAAAAGCTGAGCGAAAATGAACAGCAAAT
GGCGCACCGGCTTGATTTGCTGACGTTTCAGCTGCGTGAAATCGAGCAGGCGGCGCTCGAGCCGGGCGAGGACGAGCGGC
TGATGGAGGAAAAAGTTCGCATCGTCAATTTTCAAAAAATTTATACCGCGCTGCAGAAAAGCTATGAGGCCCTCTCCGGA
GAGGGACGCGGGCTTGATTCCATCGGGGAGGCGATGCGCCATCTCGATGACGTCGCAGGCATGGATGCAGCGCTCAAAGA
TGCGCATGAAACGACGGCGAACTGCTACTATTTGCTCGAGGAAGTCATGTACAAGCTGCGCGATCAAATTGAGGAGATGG
AATACGACCCAGAGCGGCTCGATGCCATTGAAAGCCGTCTCGCGGAAATCGGGCAGCTCAAACGAAAATACGGGGCGACG
ATCGCCGATATTTTGCACTATGCCGAGACGATCGCCGAGGAAATCGAGACAATCGAAAATCGCGAAACGCATGTGCATGA
GCTTAAGCAGCAGCTCGCTCTGGTGACGGACGAGTTGCTCACGGAGGCGAAAAACGTCACCGCTGTTCGGCAAACATATG
CCCGGCGCCTGATTGAGCGCATTCATCAAGAACTGAAAGACTTGTACATGGACAAAACGAAATTTGACATCGTATTTGCC
AAGCGCGAAGGATCGCTTGACGCTCCCTTGGTCGACGGCGTGCCGGTTAGGTTCCAAGAAGATGGCATCGATGTCGTCGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTAAAACCGCTCGTCAAAGTCGCTTCCGGCGGCGAGCTGTCGCGCATTA
TGCTGGCGTTGAAAACGATTTTTTCCAAACATCAAGGAGTGACGTCGATTGTTTTTGATGAGGTCGACACCGGTGTCAGC
GGACGCGTCGCCCAGGCAATGGCGGAAAAAATTTACCGCATCGCCAGCCAGTCGCAAGTGCTTTGCATTTCCCATCTGCC
GCAAGTCGCTGCGATGGCGGACACGCACTTGTTGATAGCCAAAGAGACGGATGGGGAACGGACGAAAACAGTCGTGAGGA
AGCTCAATGAGGAGGAGAAAGTGAAAGAAATCGGGCGGATGATTTCCGGCGTCGAGATGACGGAATTGACGAAACGGCAT
GCCAAAGAGCTGTTGGAACTGGCGGCGAAAATGAAACATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q75TB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.672

100

0.618

Multiple sequence alignment