Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GLW17_RS09645 Genome accession   NZ_CP046246
Coordinates   2035358..2037175 (+) Length   605 a.a.
NCBI ID   WP_155224674.1    Uniprot ID   A0AB37D665
Organism   Tetragenococcus halophilus strain YJ1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2030358..2042175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLW17_RS09625 (GLW17_09625) - 2031285..2032703 (+) 1419 WP_155224673.1 ISLre2-like element ISTeha1 family transposase -
  GLW17_RS09630 (GLW17_09630) spxA 2032928..2033326 (+) 399 WP_014124069.1 transcriptional regulator SpxA -
  GLW17_RS09635 (GLW17_09635) - 2033475..2034191 (+) 717 WP_061840316.1 adaptor protein MecA -
  GLW17_RS09640 (GLW17_09640) - 2034302..2035270 (+) 969 WP_061840317.1 competence protein CoiA -
  GLW17_RS09645 (GLW17_09645) pepF 2035358..2037175 (+) 1818 WP_155224674.1 oligoendopeptidase F Regulator
  GLW17_RS09650 (GLW17_09650) - 2037257..2037832 (-) 576 WP_061840319.1 CYTH domain-containing protein -
  GLW17_RS09655 (GLW17_09655) - 2037987..2038661 (+) 675 WP_014124074.1 GTP pyrophosphokinase -
  GLW17_RS09660 (GLW17_09660) - 2038654..2039460 (+) 807 WP_162302217.1 NAD kinase -
  GLW17_RS09665 (GLW17_09665) - 2039593..2040495 (+) 903 WP_061840321.1 RluA family pseudouridine synthase -
  GLW17_RS09670 (GLW17_09670) mgtE 2040501..2041865 (+) 1365 WP_041591768.1 magnesium transporter -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69946.97 Da        Isoelectric Point: 4.7775

>NTDB_id=401896 GLW17_RS09645 WP_155224674.1 2035358..2037175(+) (pepF) [Tetragenococcus halophilus strain YJ1]
MSEPKKLPKRDEVAENLTWDLTKIFKDDQAFEKAFSALQEKLRYADSYRGTLGDGSQAFLAALEYLLDVSRQLETVYVYS
HLKNDQDTSNTTYQALNSRAESLVTQADEKLSFFEPELLSLSDERIWQYFKDEPKLEIYRHFVEQIVANRAHVLPKEQEA
LLAGAGEIFGASSNTFSIMNNADFVFPVIEDENGEKVQLSHGVYGQLMESTDRLVRENAFKGLYSVYKQFGNTLASTLNS
HIKTHNYQAKVRHYHSAREAALSSNHIPESVYDHLVDVVNKNLNLLHRYMGLRKRLLQVEKLHMYDVYTPLLGEAPISFT
YDQAVDKAFEALAPMGEEYLSVVKKAFDERWIDVVENQGKRSGAYSSGTYDTNPYILLNWHDTLDHLFTLVHEMGHSVHS
YFTQNNQPYVYGDYSIFLAEIASTTNENILTEHLLQTENDPRVRAYVLNHYLDGFKGTVFRQTQFAEFEHFMHTEDAKGT
PLTSEFLNEHYGELNRRYYGDEMEDDPEIHLEWSRIPHFYYNYYVFQYATGFSAASALSQKILSEDSSALDRYLTYLKSG
DSDYPIEVMKKAGVDMTKSDYLEDAMHVFEERLNELELLVDELEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=401896 GLW17_RS09645 WP_155224674.1 2035358..2037175(+) (pepF) [Tetragenococcus halophilus strain YJ1]
ATGTCAGAACCTAAAAAATTACCTAAAAGAGACGAAGTGGCAGAAAATTTGACTTGGGATTTAACAAAAATCTTTAAAGA
TGACCAAGCATTTGAAAAAGCTTTTAGCGCGCTACAAGAAAAACTGCGGTATGCCGATTCCTATAGAGGAACTCTAGGAG
ATGGCTCACAAGCATTTCTAGCTGCACTTGAATATTTATTAGATGTTTCTCGTCAATTAGAGACTGTCTATGTTTATAGT
CATTTAAAAAATGACCAAGATACTTCAAATACAACTTATCAAGCGCTTAATTCTAGAGCAGAGTCTTTGGTAACACAAGC
AGATGAAAAATTATCTTTTTTCGAACCGGAATTATTATCGTTAAGTGATGAAAGGATTTGGCAGTATTTTAAAGACGAAC
CAAAACTTGAAATTTATCGACATTTTGTTGAACAAATCGTAGCAAATCGTGCCCACGTTTTGCCAAAAGAACAAGAAGCT
TTATTAGCAGGCGCTGGAGAGATTTTTGGTGCTTCTAGTAACACTTTTTCTATTATGAACAATGCTGATTTTGTTTTTCC
TGTCATTGAAGATGAAAATGGAGAAAAAGTACAGCTTTCTCATGGTGTTTATGGACAATTAATGGAAAGCACTGATCGTT
TAGTGCGTGAGAATGCTTTTAAAGGACTATATAGTGTATACAAGCAGTTTGGTAACACTCTTGCTTCTACACTGAATTCA
CATATTAAAACACATAATTATCAAGCAAAAGTGCGCCATTACCATTCAGCTAGAGAAGCTGCTTTATCAAGCAACCATAT
TCCAGAAAGCGTTTATGATCATTTAGTAGATGTGGTCAATAAAAACTTAAACCTTCTTCATCGCTATATGGGACTTAGGA
AACGTTTATTACAAGTGGAAAAATTGCATATGTATGATGTTTACACGCCACTTTTAGGCGAAGCTCCTATTAGTTTTACT
TATGACCAGGCGGTAGATAAAGCGTTTGAAGCACTAGCGCCTATGGGAGAAGAGTATTTAAGTGTCGTGAAAAAGGCCTT
TGATGAACGTTGGATCGATGTTGTAGAAAATCAAGGAAAACGTAGCGGTGCTTATTCTTCAGGTACTTATGATACCAATC
CTTATATTTTATTAAATTGGCATGATACATTGGATCATTTATTTACCCTGGTACATGAAATGGGGCATAGTGTTCATAGT
TACTTTACCCAAAATAATCAACCTTATGTATATGGAGATTACTCAATTTTCTTAGCAGAGATTGCTTCAACTACCAATGA
AAATATCTTGACTGAACATCTTTTACAAACAGAAAATGACCCACGCGTTCGGGCATATGTATTAAATCACTATTTAGACG
GTTTTAAAGGTACAGTTTTCCGTCAAACACAATTTGCGGAGTTTGAGCATTTTATGCACACTGAGGACGCTAAAGGCACA
CCATTAACAAGTGAGTTTTTAAATGAGCATTATGGAGAGTTGAATAGACGATATTATGGTGATGAAATGGAAGACGATCC
AGAAATACATCTTGAATGGTCGCGTATTCCTCATTTTTATTATAATTACTATGTGTTCCAATATGCGACAGGTTTTTCTG
CTGCTTCTGCCTTGTCACAAAAAATCTTATCAGAAGACTCGAGTGCCTTGGATCGTTATTTGACCTATCTAAAATCTGGT
GATAGTGATTATCCTATTGAAGTGATGAAAAAAGCTGGAGTGGATATGACAAAATCGGATTATTTAGAAGATGCGATGCA
TGTTTTTGAAGAGCGGTTAAATGAGTTAGAACTACTCGTTGATGAATTAGAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.975

98.017

0.539

Multiple sequence alignment