Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | GLW17_RS06720 | Genome accession | NZ_CP046246 |
| Coordinates | 1446333..1447703 (-) | Length | 456 a.a. |
| NCBI ID | WP_061840899.1 | Uniprot ID | A0A2H6CRK9 |
| Organism | Tetragenococcus halophilus strain YJ1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 1448452..1449870 | 1446333..1447703 | flank | 749 |
Gene organization within MGE regions
Location: 1446333..1449870
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GLW17_RS06720 (GLW17_06720) | radA | 1446333..1447703 (-) | 1371 | WP_061840899.1 | DNA repair protein RadA | Machinery gene |
| GLW17_RS06725 (GLW17_06725) | - | 1447727..1448227 (-) | 501 | WP_014123418.1 | hypothetical protein | - |
| GLW17_RS06730 (GLW17_06730) | - | 1448452..1449870 (+) | 1419 | WP_155224544.1 | ISLre2-like element ISTeha1 family transposase | - |
Sequence
Protein
Download Length: 456 a.a. Molecular weight: 50077.63 Da Isoelectric Point: 6.5285
>NTDB_id=401889 GLW17_RS06720 WP_061840899.1 1446333..1447703(-) (radA) [Tetragenococcus halophilus strain YJ1]
MAKKVKTQFECQNCGYISPRYLGKCPNCGSWNSMVEEKLQDTTDRRNRTTLTGSKMQPTLLKDVVPKKEPRIKTSLDELN
RVLGGGVVPGSMILLGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESTEQIKLRAQRLGDAENDFYLFAETDMQDIRE
TIEKLQPDYVIIDSIQTMTQPDISSAAGSVSQVRETTAELLKIAKSNEIAVFVVGHVTKEGSIAGPRMLEHMVDTVLYFE
GDKYQSFRILRAVKNRFGSTNEIGIFEMYEQGLKEVSNPSQVFLEERLEGTSGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTATGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAISIASSYKEKGTKPTECFIGEIGLTG
EIRRVSAIEQRVKEVQKLGFEKVYIPKNNLSGWKAPADIEVVGIATLDEALKRIFR
MAKKVKTQFECQNCGYISPRYLGKCPNCGSWNSMVEEKLQDTTDRRNRTTLTGSKMQPTLLKDVVPKKEPRIKTSLDELN
RVLGGGVVPGSMILLGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESTEQIKLRAQRLGDAENDFYLFAETDMQDIRE
TIEKLQPDYVIIDSIQTMTQPDISSAAGSVSQVRETTAELLKIAKSNEIAVFVVGHVTKEGSIAGPRMLEHMVDTVLYFE
GDKYQSFRILRAVKNRFGSTNEIGIFEMYEQGLKEVSNPSQVFLEERLEGTSGSAIVVAMEGTRPILVEIQALVTPTMFG
NAKRTATGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAISIASSYKEKGTKPTECFIGEIGLTG
EIRRVSAIEQRVKEVQKLGFEKVYIPKNNLSGWKAPADIEVVGIATLDEALKRIFR
Nucleotide
Download Length: 1371 bp
>NTDB_id=401889 GLW17_RS06720 WP_061840899.1 1446333..1447703(-) (radA) [Tetragenococcus halophilus strain YJ1]
ATGGCAAAAAAGGTAAAAACACAATTTGAATGTCAAAATTGCGGTTATATTTCACCTAGGTATCTAGGCAAATGTCCTAA
TTGTGGTAGTTGGAATTCGATGGTAGAAGAAAAACTACAAGACACTACCGATCGCAGGAATCGAACAACACTGACAGGTA
GCAAGATGCAGCCGACACTTTTAAAAGATGTTGTTCCTAAAAAAGAGCCACGAATAAAGACATCTCTAGATGAATTGAAT
CGTGTCTTAGGTGGAGGTGTGGTTCCAGGATCGATGATCCTATTAGGCGGGGATCCTGGTATTGGTAAGTCCACCTTGCT
TTTACAAGTATCGCAACAGTTAGCAGCAACCGGTGGAACAGTACTTTATGTCTCCGGAGAAGAAAGTACAGAACAAATCA
AATTACGAGCGCAGCGTTTAGGCGATGCCGAAAATGATTTTTATTTATTTGCTGAAACGGATATGCAGGATATTCGAGAA
ACAATTGAAAAGCTGCAACCCGATTATGTGATCATTGACTCCATTCAAACGATGACACAACCAGATATTTCAAGCGCGGC
CGGAAGTGTTAGCCAAGTTCGAGAAACTACGGCCGAGTTATTAAAAATCGCTAAATCAAACGAAATTGCCGTCTTTGTGG
TTGGCCATGTGACTAAAGAAGGTTCTATCGCTGGCCCTCGTATGCTAGAGCATATGGTTGATACAGTATTGTATTTTGAA
GGAGATAAGTACCAAAGTTTTCGTATTTTACGGGCAGTAAAAAACCGTTTTGGTTCGACTAATGAGATCGGCATTTTTGA
AATGTATGAACAAGGCCTCAAAGAAGTAAGTAATCCTTCACAAGTTTTTTTAGAAGAACGATTAGAAGGAACGAGCGGAT
CTGCCATTGTGGTTGCGATGGAAGGAACGCGTCCTATTCTAGTGGAAATACAAGCATTAGTTACACCAACGATGTTTGGA
AATGCTAAACGAACGGCTACTGGCTTAGATTTTAATCGAGTCTCCTTGATTATGGCTGTATTAGAAAAACGAGCAGGCCT
ACTTTTACAAAATCAGGATGCTTATTTAAAAGCAGCTGGTGGTGTAAAATTAAATGAACCAGCGATCGATCTAGCTATAG
CTATTAGTATTGCTTCAAGTTATAAAGAAAAAGGTACAAAACCTACTGAATGTTTCATTGGGGAAATTGGTCTTACAGGG
GAAATTCGTCGCGTGAGTGCTATTGAGCAGCGCGTAAAAGAGGTTCAAAAATTAGGTTTTGAGAAAGTGTATATACCAAA
AAATAATTTAAGCGGCTGGAAAGCGCCAGCTGACATCGAGGTTGTTGGTATCGCAACACTTGATGAAGCATTAAAACGTA
TATTTAGGTAA
ATGGCAAAAAAGGTAAAAACACAATTTGAATGTCAAAATTGCGGTTATATTTCACCTAGGTATCTAGGCAAATGTCCTAA
TTGTGGTAGTTGGAATTCGATGGTAGAAGAAAAACTACAAGACACTACCGATCGCAGGAATCGAACAACACTGACAGGTA
GCAAGATGCAGCCGACACTTTTAAAAGATGTTGTTCCTAAAAAAGAGCCACGAATAAAGACATCTCTAGATGAATTGAAT
CGTGTCTTAGGTGGAGGTGTGGTTCCAGGATCGATGATCCTATTAGGCGGGGATCCTGGTATTGGTAAGTCCACCTTGCT
TTTACAAGTATCGCAACAGTTAGCAGCAACCGGTGGAACAGTACTTTATGTCTCCGGAGAAGAAAGTACAGAACAAATCA
AATTACGAGCGCAGCGTTTAGGCGATGCCGAAAATGATTTTTATTTATTTGCTGAAACGGATATGCAGGATATTCGAGAA
ACAATTGAAAAGCTGCAACCCGATTATGTGATCATTGACTCCATTCAAACGATGACACAACCAGATATTTCAAGCGCGGC
CGGAAGTGTTAGCCAAGTTCGAGAAACTACGGCCGAGTTATTAAAAATCGCTAAATCAAACGAAATTGCCGTCTTTGTGG
TTGGCCATGTGACTAAAGAAGGTTCTATCGCTGGCCCTCGTATGCTAGAGCATATGGTTGATACAGTATTGTATTTTGAA
GGAGATAAGTACCAAAGTTTTCGTATTTTACGGGCAGTAAAAAACCGTTTTGGTTCGACTAATGAGATCGGCATTTTTGA
AATGTATGAACAAGGCCTCAAAGAAGTAAGTAATCCTTCACAAGTTTTTTTAGAAGAACGATTAGAAGGAACGAGCGGAT
CTGCCATTGTGGTTGCGATGGAAGGAACGCGTCCTATTCTAGTGGAAATACAAGCATTAGTTACACCAACGATGTTTGGA
AATGCTAAACGAACGGCTACTGGCTTAGATTTTAATCGAGTCTCCTTGATTATGGCTGTATTAGAAAAACGAGCAGGCCT
ACTTTTACAAAATCAGGATGCTTATTTAAAAGCAGCTGGTGGTGTAAAATTAAATGAACCAGCGATCGATCTAGCTATAG
CTATTAGTATTGCTTCAAGTTATAAAGAAAAAGGTACAAAACCTACTGAATGTTTCATTGGGGAAATTGGTCTTACAGGG
GAAATTCGTCGCGTGAGTGCTATTGAGCAGCGCGTAAAAGAGGTTCAAAAATTAGGTTTTGAGAAAGTGTATATACCAAA
AAATAATTTAAGCGGCTGGAAAGCGCCAGCTGACATCGAGGTTGTTGGTATCGCAACACTTGATGAAGCATTAAAACGTA
TATTTAGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus mitis SK321 |
69.89 |
99.781 |
0.697 |
| radA | Streptococcus mitis NCTC 12261 |
69.89 |
99.781 |
0.697 |
| radA | Streptococcus pneumoniae Rx1 |
69.89 |
99.781 |
0.697 |
| radA | Streptococcus pneumoniae D39 |
69.89 |
99.781 |
0.697 |
| radA | Streptococcus pneumoniae R6 |
69.89 |
99.781 |
0.697 |
| radA | Streptococcus pneumoniae TIGR4 |
69.89 |
99.781 |
0.697 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
64.08 |
98.904 |
0.634 |