Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   GLS60_RS01990 Genome accession   NZ_CP046243
Coordinates   394216..395394 (-) Length   392 a.a.
NCBI ID   WP_070255870.1    Uniprot ID   -
Organism   Campylobacter lari strain SCHS02     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 389216..400394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLS60_RS01970 (GLS60_01970) - 389685..390038 (-) 354 WP_039627957.1 membrane protein -
  GLS60_RS01975 (GLS60_01975) - 390035..391408 (-) 1374 WP_070255879.1 cytochrome P450 -
  GLS60_RS01980 (GLS60_01980) - 391418..392548 (-) 1131 WP_070255876.1 DUF829 domain-containing protein -
  GLS60_RS07820 - 392711..394219 (+) 1509 WP_070255873.1 SGNH/GDSL hydrolase family protein -
  GLS60_RS01990 (GLS60_01990) kpsS 394216..395394 (-) 1179 WP_070255870.1 capsular biosynthesis protein Regulator
  GLS60_RS01995 (GLS60_01995) - 395391..397433 (-) 2043 WP_070255866.1 capsular polysaccharide biosynthesis protein -
  GLS60_RS02000 (GLS60_02000) - 397442..398308 (-) 867 WP_057032362.1 TylF/MycF/NovP-related O-methyltransferase -
  GLS60_RS02005 (GLS60_02005) - 398305..399021 (-) 717 WP_057032363.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46319.82 Da        Isoelectric Point: 10.1408

>NTDB_id=401856 GLS60_RS01990 WP_070255870.1 394216..395394(-) (kpsS) [Campylobacter lari strain SCHS02]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIATKIPQAKVYKVNFNGGDFFFYPFKSINYTKSLAELEDFYKKLFEEKQIQV
VIMYNDCRKVHEIAISVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFRNM
AFASFLYWFFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIISFANHAKAKSYLVFKHHPMDRGYRDYAKLIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHAFWKECRAYKPDAVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=401856 GLS60_RS01990 WP_070255870.1 394216..395394(-) (kpsS) [Campylobacter lari strain SCHS02]
ATGAATTTAAGTAAAAAGTTAAAAAAATTTTCTGGTAAAAATGTTTTATTGCTCCAAGGACCTGTAGGTGGATTTTTTCG
TAAAATTGCTACAAAAATTCCGCAAGCTAAGGTTTATAAAGTAAATTTTAATGGTGGAGATTTTTTCTTTTATCCTTTTA
AAAGTATTAATTACACTAAAAGTTTAGCCGAGCTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAAACAAATTCAAGTT
GTTATTATGTACAATGATTGTAGAAAAGTGCATGAAATCGCCATTAGTGTTGCTAAGCAAATGGGTATTGAAGTATGGAT
TTTTGAAGAAGGTTATATAAGACCAAACTTCATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCGACCTTACCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGACAAAGATTTTAAATTTAAAACTTTCTCAAGCACTTTTAGAAATATG
GCCTTTGCTTCATTTTTATACTGGTTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACACCATAGAAGTTT
AAAATTATTTGACTTTTTACCTTGGCTTTGCTCAGTATATAGAAAAAACAAATACAAAATCACAGAAAAAAGTTTAAATG
AAAAAATTCTTTCCCTAAAACAAAAGTATTTTTTAGCTATTTTGCAAGTGCATAATGATACTCAACTCTCTCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAGGTGATCATCTCTTTTGCTAATCATGCCAAAGCAAAGTCTTATCTAGTTTT
TAAGCACCATCCTATGGATCGTGGCTATAGGGACTATGCTAAACTTATAGAAGATTTGAGCTTAAAATATAATGTCGAGG
GTAGAATTTTATATGTGCATGATTTACACTTACCTACACTTTTAATCAATGCAAGAGGTACTATAGTCATAAATAGCACA
GTAGGACTTTCTGCTTTATATCACAATAGTCCTTTAAAGGTTATGGGAAAAGCTTTTTATGATATAGAAGGTTTGACTTA
TCAAAAAAGCTTGCATGCTTTTTGGAAAGAATGTAGAGCATATAAACCTGATGCAGTTTTGCACGCTAAATTTAGAAATT
ATGTAATATATAAAACCCAAGTCAATGGAAATTTCTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.519

100

0.62

Multiple sequence alignment