Detailed information NTG0401855

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: GLS60_RS01645
• Genome accession: NZ_CP046243
• Coordinates: 320267..321658 (-)
• Length: 463 a.a.
• NCBI ID: WP_070256004.1
• Uniprot ID: -
• Organism: Campylobacter lari strain SCHS02
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 315267..326658

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GLS60_RS01620 (GLS60_01620)	-	315810..316559 (+)	750	WP_070256010.1	TIGR02757 family protein	-
GLS60_RS01625 (GLS60_01625)	-	316544..317296 (+)	753	WP_012661135.1	TSUP family transporter	-
GLS60_RS01630 (GLS60_01630)	-	317293..318453 (-)	1161	WP_070256007.1	type II secretion system F family protein	-
GLS60_RS01635 (GLS60_01635)	-	318450..319964 (-)	1515	WP_012661133.1	GspE/PulE family protein	-
GLS60_RS01640 (GLS60_01640)	-	319957..320286 (-)	330	WP_012661132.1	hypothetical protein	-
GLS60_RS01645 (GLS60_01645)	ctsD	320267..321658 (-)	1392	WP_070256004.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
GLS60_RS01650 (GLS60_01650)	-	321630..321890 (-)	261	WP_148120128.1	hypothetical protein	-
GLS60_RS01655 (GLS60_01655)	nifJ	321957..325511 (-)	3555	WP_070255998.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
GLS60_RS01660 (GLS60_01660)	-	325629..326273 (-)	645	WP_070255995.1	HAD family hydrolase	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52525.34 Da
• Isoelectric Point: 7.9605

>NTDB_id=401855 GLS60_RS01645 WP_070256004.1 320267..321658(-) (ctsD) [Campylobacter lari strain SCHS02]
MKKIIFLFISILSFTNIFASQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFDFWEKIS
EEIQALLDENATKPIINTNAGIITLNATLYELTRVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQDLAFKLNG
DDNDFIINKGGVKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=401855 GLS60_RS01645 WP_070256004.1 320267..321658(-) (ctsD) [Campylobacter lari strain SCHS02]
ATGAAAAAAATAATATTTTTATTCATTAGTATTTTAAGTTTTACAAATATTTTTGCTTCGCAGTGTCATCAGCGCTTTTT
TGATATAAGCGTAGAAAATAAGACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGATTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATTTACACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGCTCTATTAGAGAAGGGCAAAGCATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AGGGTGATTATGATAGTGCTAAAGAAGCAGATAATTTAGTCATTAGCACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATGCAACTAAACCTATTATTAATACTAATGCGGGAATTATTACTTTAAATGC
TACCTTGTATGAACTTACAAGAGTTGAAAAATATCTAAAAGACTTAAATAAAAGACTTAAAAAGCAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGCCATTCAAGTGGGATTAACTGGCAAGATCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGTGGTGTTAAAAATATTAATCTTAAAGCTAATGTTGAAACTAAGGCTATTTT
AAATTTATTGCAAGAAAATGGTAAAACCACTGTACTTTCTAACCCAAAACTCATGGCACTTAATAATCAGCAAGCTATTA
TTTCCATAGGTGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACGACCATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATCATGCTTAG
GATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCACCAGATA
CTATACAAAAAAAGCTTTCTACTGTAGTTGAAGTGGATGATGGGCAAACTTTAATTTTGGGTGGATTGATTAGTAAAAAT
ACGATTAGTAATCATAATGAAGTAAGTGCTTTATCTAAAATACCACTTTTTGGTGCCTTGTTTCAAGGAAAGCAAAATTT
AGAAGATATTAGTGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTGAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	57.265	100	0.579