Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GMA17_RS12075 Genome accession   NZ_CP046242
Coordinates   2605373..2606734 (-) Length   453 a.a.
NCBI ID   WP_248396521.1    Uniprot ID   -
Organism   Bizionia sp. M204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2600373..2611734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMA17_RS12060 (GMA17_11960) - 2600871..2601254 (-) 384 WP_248396516.1 TraR/DksA C4-type zinc finger protein -
  GMA17_RS12065 (GMA17_11965) ileS 2601259..2604663 (-) 3405 WP_248396518.1 isoleucine--tRNA ligase -
  GMA17_RS12070 (GMA17_11970) - 2604751..2605362 (-) 612 WP_248396519.1 hypothetical protein -
  GMA17_RS12075 (GMA17_11975) radA 2605373..2606734 (-) 1362 WP_248396521.1 DNA repair protein RadA Machinery gene
  GMA17_RS12080 (GMA17_11980) - 2606774..2607922 (-) 1149 WP_248396523.1 alpha/beta hydrolase -
  GMA17_RS12085 (GMA17_11985) - 2608096..2609076 (-) 981 WP_248396525.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  GMA17_RS12090 (GMA17_11990) panD 2609080..2609430 (-) 351 WP_248396527.1 aspartate 1-decarboxylase -
  GMA17_RS12095 (GMA17_11995) panC 2609444..2610292 (-) 849 WP_248396529.1 pantoate--beta-alanine ligase -
  GMA17_RS12100 (GMA17_12000) - 2610400..2611209 (+) 810 WP_248396531.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49952.44 Da        Isoelectric Point: 6.8411

>NTDB_id=401847 GMA17_RS12075 WP_248396521.1 2605373..2606734(-) (radA) [Bizionia sp. M204]
MAKVKTTFFCQNCGSQYSKWQGQCTACKEWNTIAEEVLQKPEKSDWKTPTSTNKKRVSKPLLINEIDASQEARMQTGDAE
FNRVLGGGIVPGSLTLLGGEPGIGKSTLLLQIALKLPYKTLYISGEESQKQIKMRAERINPNSNNCYILTETKTQNIFKQ
IEELEPDIVVVDSIQTLHSDYIESSSGSISQIKECTTELIKFAKETATPVVLIGHITKDGNIAGPKILEHMVDTVLQFEG
DRNHVFRILRANKNRFGSTNELGIYEMQGSGLREVSNPSEILISKKDEDLSGNAISATLEGMRPLMIEVQALVSTAVYGT
PQRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGITVDDPAIDLAVVAAILSSNEDVSLPRDYCFAAEVGLSGE
IRPVQRVEQRILEAEKLGFSTIFVSKYNKISLKNMTIKIQLISKIEDLVGFIV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=401847 GMA17_RS12075 WP_248396521.1 2605373..2606734(-) (radA) [Bizionia sp. M204]
ATGGCTAAAGTAAAAACAACATTTTTTTGTCAGAATTGTGGTTCACAATACAGCAAATGGCAAGGGCAATGTACGGCTTG
TAAGGAGTGGAATACCATTGCGGAAGAAGTTCTTCAGAAACCGGAAAAAAGTGATTGGAAAACACCAACATCTACAAATA
AAAAACGCGTTTCCAAGCCCTTATTAATTAATGAGATTGATGCATCACAAGAAGCTCGAATGCAAACAGGCGACGCCGAA
TTTAACCGCGTTCTAGGTGGTGGCATTGTACCAGGATCTTTAACCCTTTTAGGTGGTGAACCCGGAATTGGAAAAAGCAC
CTTGTTGCTGCAGATAGCTTTAAAATTGCCTTATAAAACATTGTATATTTCTGGTGAAGAAAGCCAGAAACAAATAAAAA
TGCGTGCCGAACGTATTAATCCAAACAGTAATAATTGCTACATTCTAACCGAAACAAAAACGCAAAATATCTTTAAGCAA
ATCGAAGAGCTAGAACCCGATATTGTGGTGGTAGATTCTATTCAAACCTTGCATAGTGATTATATCGAATCCTCGTCCGG
AAGTATCTCGCAAATTAAGGAATGTACAACAGAACTGATAAAATTTGCTAAAGAAACCGCCACACCTGTTGTTTTAATTG
GTCATATTACCAAAGACGGAAATATTGCCGGTCCTAAAATTTTGGAACACATGGTGGATACGGTTTTGCAATTTGAAGGC
GATCGGAATCATGTTTTTCGCATTTTACGGGCTAACAAAAATCGATTTGGTTCCACCAACGAACTCGGTATTTATGAAAT
GCAAGGGTCTGGGTTGCGTGAAGTTTCAAACCCTTCGGAAATTCTTATCTCTAAAAAGGACGAAGATTTATCAGGTAATG
CTATTTCAGCAACCTTAGAAGGTATGCGCCCGCTCATGATTGAAGTTCAGGCTTTGGTCAGTACAGCGGTTTATGGAACA
CCACAACGGAGTGCAACAGGCTTTAACGCCAAACGATTAAACATGTTATTGGCTGTTTTAGAAAAACGAGCCGGTTTTCG
TTTAGGAGCTAAAGATGTGTTTTTGAATATTACAGGTGGTATAACTGTAGATGATCCTGCTATCGATTTAGCGGTGGTTG
CCGCTATTTTATCCTCTAATGAAGATGTATCTTTGCCAAGAGATTATTGTTTTGCTGCCGAAGTTGGACTGTCTGGAGAA
ATCCGACCAGTGCAACGTGTGGAACAGCGCATTTTAGAAGCTGAAAAATTAGGGTTTTCAACCATATTTGTGTCTAAATA
CAATAAGATTTCCTTAAAAAATATGACCATAAAAATCCAATTGATTTCTAAAATTGAAGATTTGGTTGGGTTTATTGTGT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(328-428)

AAA domain (AAA_25)

(72-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.812

95.143

0.483
  radA Streptococcus pneumoniae Rx1

48.198

98.013

0.472
  radA Streptococcus pneumoniae D39

48.198

98.013

0.472
  radA Streptococcus pneumoniae R6

48.198

98.013

0.472
  radA Streptococcus pneumoniae TIGR4

48.198

98.013

0.472
  radA Streptococcus mitis SK321

48.198

98.013

0.472
  radA Streptococcus mitis NCTC 12261

49.065

94.481

0.464

Multiple sequence alignment