Detailed information NTG0401828

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUS13_RS09275
• Genome accession: NZ_CP054845
• Coordinates: 1934395..1935399 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SE5429
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1929395..1940399

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUS13_RS09245 (HUS13_09240)	fghA	1929487..1930338 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
HUS13_RS09250 (HUS13_09245)	ispF	1930409..1930882 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUS13_RS09255 (HUS13_09250)	truD	1930879..1931946 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
HUS13_RS09260 (HUS13_09255)	surE	1931934..1932683 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HUS13_RS09265 (HUS13_09260)	-	1932716..1933351 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HUS13_RS09270 (HUS13_09265)	-	1933397..1934290 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
HUS13_RS09275 (HUS13_09270)	rpoS	1934395..1935399 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HUS13_RS09280 (HUS13_09275)	fdxA	1935826..1936149 (-)	324	WP_003092272.1	ferredoxin FdxA	-
HUS13_RS09285 (HUS13_09280)	mutS	1936216..1938783 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
HUS13_RS09290 (HUS13_09285)	-	1938909..1939916 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=401828 HUS13_RS09275 WP_003113871.1 1934395..1935399(+) (rpoS) [Pseudomonas aeruginosa strain SE5429]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=401828 HUS13_RS09275 WP_003113871.1 1934395..1935399(+) (rpoS) [Pseudomonas aeruginosa strain SE5429]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653