Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | GKD17_RS03940 | Genome accession | NZ_CP046176 |
| Coordinates | 1019950..1021317 (-) | Length | 455 a.a. |
| NCBI ID | WP_007836751.1 | Uniprot ID | A0A858XJ36 |
| Organism | Phocaeicola dorei strain DSM 17855 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1014950..1026317
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKD17_RS03925 (GKD17_03975) | - | 1016995..1017519 (+) | 525 | WP_007836748.1 | flavodoxin | - |
| GKD17_RS03930 (GKD17_03980) | - | 1017605..1019248 (-) | 1644 | WP_007836749.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| GKD17_RS03935 (GKD17_03985) | - | 1019263..1019904 (-) | 642 | WP_007836750.1 | DUF1847 domain-containing protein | - |
| GKD17_RS03940 (GKD17_03990) | radA | 1019950..1021317 (-) | 1368 | WP_007836751.1 | DNA repair protein RadA | Machinery gene |
| GKD17_RS03945 (GKD17_03995) | - | 1021574..1022455 (+) | 882 | WP_007836753.1 | DUF3078 domain-containing protein | - |
| GKD17_RS03950 (GKD17_04000) | thrA | 1023053..1025485 (+) | 2433 | WP_022185657.1 | bifunctional aspartate kinase/homoserine dehydrogenase I | - |
Sequence
Protein
Download Length: 455 a.a. Molecular weight: 49931.56 Da Isoelectric Point: 6.8892
>NTDB_id=401826 GKD17_RS03940 WP_007836751.1 1019950..1021317(-) (radA) [Phocaeicola dorei strain DSM 17855]
MAKEKTVYVCTNCGQDSPKWVGKCPSCGAWNTYVEEVVRKKPANKRPVSGLEPVKSKPVTLNDITGGDEPRIDMQDEELN
RVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLPDRKVLYISGEESTRQLKLRADRIPHNSSDCLIVCETSLEQIYIHI
KNTQPDLVIIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDHDGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEVERDTCMAGEVGLSGEI
RPVNRIEQRIGEAEKLGFKRILIPKHNLQGMDTSKLKIEIIPVRKVEEAFRALFG
MAKEKTVYVCTNCGQDSPKWVGKCPSCGAWNTYVEEVVRKKPANKRPVSGLEPVKSKPVTLNDITGGDEPRIDMQDEELN
RVLGGGLVPGSLVLLGGEPGIGKSTLVLQTVLHLPDRKVLYISGEESTRQLKLRADRIPHNSSDCLIVCETSLEQIYIHI
KNTQPDLVIIDSIQTISTETIDSSPGSLVQVRECSASILKFAKETNTPVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQNGLRQVSNPSELLLSQDHDGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTEVERDTCMAGEVGLSGEI
RPVNRIEQRIGEAEKLGFKRILIPKHNLQGMDTSKLKIEIIPVRKVEEAFRALFG
Nucleotide
Download Length: 1368 bp
>NTDB_id=401826 GKD17_RS03940 WP_007836751.1 1019950..1021317(-) (radA) [Phocaeicola dorei strain DSM 17855]
ATGGCAAAGGAAAAAACTGTATATGTATGCACCAACTGTGGGCAGGATTCACCCAAATGGGTAGGGAAATGTCCGTCTTG
CGGTGCATGGAACACATACGTAGAAGAAGTTGTACGCAAGAAACCTGCAAATAAAAGACCGGTATCCGGTCTGGAACCCG
TAAAAAGCAAGCCTGTCACACTGAATGACATAACCGGAGGAGACGAGCCTCGAATTGATATGCAAGACGAAGAGCTGAAC
CGGGTATTGGGAGGTGGCTTAGTACCGGGCTCACTCGTTTTACTGGGTGGTGAACCGGGGATAGGCAAATCTACCTTGGT
GTTGCAAACCGTACTTCATCTGCCTGACAGAAAAGTATTGTATATTTCGGGAGAAGAAAGTACACGACAATTAAAACTAC
GTGCAGACCGTATCCCGCATAATTCTTCCGACTGCCTGATCGTCTGTGAAACTTCATTGGAGCAGATTTATATACATATA
AAGAATACACAACCCGATCTCGTCATCATCGACTCTATTCAAACCATCTCCACTGAAACAATAGACTCTTCTCCCGGCAG
TTTAGTACAGGTGCGTGAATGTTCCGCCTCTATTTTGAAATTTGCCAAAGAAACAAATACGCCGGTCATCTTAATCGGCC
ATATCAATAAAGAAGGAAGCATTGCCGGACCGAAAGTACTGGAACATATTGTAGACACCGTATTGCAATTTGAAGGTGAC
CAACATTATATGTACCGCATTCTTCGCAGCATCAAGAACCGTTTCGGAAGCACTGCCGAACTGGGCATTTATGAAATGCG
ACAAAATGGTTTGCGCCAAGTGAGCAACCCGTCCGAACTGTTGCTTAGCCAAGACCATGACGGAATGAGTGGAGTCGCTA
TCGCCTCTGCCATAGAAGGTGTCCGTCCTTTCTTAATTGAAACACAAGCCTTAGTCAGTTCGGCTGTATATGGAAATCCG
CAACGTTCTGCCACCGGATTTGATTTACGACGTATGAATATGCTTCTGGCAGTACTCGAAAAACGGGTAGGATTCAAACT
GGCACAAAAAGATGTCTTTTTAAACATTGCGGGTGGATTGAAAGTGAATGATCCGGCCATCGACTTGTCTGTCATCAGTG
CCATTCTATCCAGCAATATGGATACAGAGGTAGAACGCGATACCTGCATGGCCGGAGAAGTGGGACTAAGTGGTGAAATC
CGACCTGTAAACCGTATTGAACAGCGAATCGGAGAAGCGGAAAAGTTAGGCTTTAAACGAATCCTTATACCAAAACATAA
TTTACAAGGAATGGATACATCAAAATTGAAAATAGAAATTATTCCGGTCAGAAAAGTGGAAGAAGCATTCCGGGCCTTGT
TTGGATAA
ATGGCAAAGGAAAAAACTGTATATGTATGCACCAACTGTGGGCAGGATTCACCCAAATGGGTAGGGAAATGTCCGTCTTG
CGGTGCATGGAACACATACGTAGAAGAAGTTGTACGCAAGAAACCTGCAAATAAAAGACCGGTATCCGGTCTGGAACCCG
TAAAAAGCAAGCCTGTCACACTGAATGACATAACCGGAGGAGACGAGCCTCGAATTGATATGCAAGACGAAGAGCTGAAC
CGGGTATTGGGAGGTGGCTTAGTACCGGGCTCACTCGTTTTACTGGGTGGTGAACCGGGGATAGGCAAATCTACCTTGGT
GTTGCAAACCGTACTTCATCTGCCTGACAGAAAAGTATTGTATATTTCGGGAGAAGAAAGTACACGACAATTAAAACTAC
GTGCAGACCGTATCCCGCATAATTCTTCCGACTGCCTGATCGTCTGTGAAACTTCATTGGAGCAGATTTATATACATATA
AAGAATACACAACCCGATCTCGTCATCATCGACTCTATTCAAACCATCTCCACTGAAACAATAGACTCTTCTCCCGGCAG
TTTAGTACAGGTGCGTGAATGTTCCGCCTCTATTTTGAAATTTGCCAAAGAAACAAATACGCCGGTCATCTTAATCGGCC
ATATCAATAAAGAAGGAAGCATTGCCGGACCGAAAGTACTGGAACATATTGTAGACACCGTATTGCAATTTGAAGGTGAC
CAACATTATATGTACCGCATTCTTCGCAGCATCAAGAACCGTTTCGGAAGCACTGCCGAACTGGGCATTTATGAAATGCG
ACAAAATGGTTTGCGCCAAGTGAGCAACCCGTCCGAACTGTTGCTTAGCCAAGACCATGACGGAATGAGTGGAGTCGCTA
TCGCCTCTGCCATAGAAGGTGTCCGTCCTTTCTTAATTGAAACACAAGCCTTAGTCAGTTCGGCTGTATATGGAAATCCG
CAACGTTCTGCCACCGGATTTGATTTACGACGTATGAATATGCTTCTGGCAGTACTCGAAAAACGGGTAGGATTCAAACT
GGCACAAAAAGATGTCTTTTTAAACATTGCGGGTGGATTGAAAGTGAATGATCCGGCCATCGACTTGTCTGTCATCAGTG
CCATTCTATCCAGCAATATGGATACAGAGGTAGAACGCGATACCTGCATGGCCGGAGAAGTGGGACTAAGTGGTGAAATC
CGACCTGTAAACCGTATTGAACAGCGAATCGGAGAAGCGGAAAAGTTAGGCTTTAAACGAATCCTTATACCAAAACATAA
TTTACAAGGAATGGATACATCAAAATTGAAAATAGAAATTATTCCGGTCAGAAAAGTGGAAGAAGCATTCCGGGCCTTGT
TTGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
52.505 |
100 |
0.53 |
| radA | Streptococcus mitis SK321 |
48.684 |
100 |
0.488 |
| radA | Streptococcus pneumoniae Rx1 |
48.684 |
100 |
0.488 |
| radA | Streptococcus pneumoniae D39 |
48.684 |
100 |
0.488 |
| radA | Streptococcus pneumoniae R6 |
48.684 |
100 |
0.488 |
| radA | Streptococcus pneumoniae TIGR4 |
48.684 |
100 |
0.488 |
| radA | Streptococcus mitis NCTC 12261 |
48.684 |
100 |
0.488 |