Detailed information NTG0401738

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GGC03_RS07350
• Genome accession: NZ_CP046162
• Coordinates: 1578052..1579476 (-)
• Length: 474 a.a.
• NCBI ID: WP_006962037.1
• Uniprot ID: A0AAJ4AFA0
• Organism: Vibrio sp. THAF191c
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1573052..1584476

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GGC03_RS07330 (GGC03_07375)	-	1574466..1575668 (+)	1203	WP_031343039.1	HD-GYP domain-containing protein	-
GGC03_RS07335 (GGC03_07380)	cdd	1575723..1576610 (-)	888	WP_043007793.1	cytidine deaminase	-
GGC03_RS07340 (GGC03_07385)	-	1576864..1577541 (-)	678	WP_006962033.1	CidB/LrgB family autolysis modulator	-
GGC03_RS07345 (GGC03_07390)	-	1577541..1577906 (-)	366	WP_006962035.1	CidA/LrgA family protein	-
GGC03_RS07350 (GGC03_07395)	sbcB	1578052..1579476 (-)	1425	WP_006962037.1	exodeoxyribonuclease I	Machinery gene
GGC03_RS07355 (GGC03_07400)	-	1579616..1580989 (-)	1374	WP_006962038.1	L-cystine transporter	-
GGC03_RS07360 (GGC03_07405)	-	1581181..1581867 (-)	687	WP_006962039.1	NAD(P)H-binding protein	-
GGC03_RS07365 (GGC03_07410)	-	1582393..1583004 (+)	612	WP_039952349.1	flavin reductase family protein	-
GGC03_RS07370 (GGC03_07415)	cobT	1583011..1584039 (+)	1029	WP_006962041.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54713.02 Da
• Isoelectric Point: 5.0914

>NTDB_id=401738 GGC03_RS07350 WP_006962037.1 1578052..1579476(-) (sbcB) [Vibrio sp. THAF191c]
MQQAHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQKAASKGLPEP
EFITKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENEEGFI
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGRECNY
TSWVVPVAWHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKCPILAPAKTLTAENAA
NIGIDREKCLQNLERLRQHPEIREKLNSLYSIEREYEKSDDVDTMLYDGFFSPAAKQSMDIIRETEPKNLSALDISFSDD
RIAPLLFRYRARHFPWTLDESEQQKWAAHSREYFESRIEDYMLNLENLVHEHESDEKKIAILKSVYQYVQKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=401738 GGC03_RS07350 WP_006962037.1 1578052..1579476(-) (sbcB) [Vibrio sp. THAF191c]
ATGCAACAAGCGCATCAACCTACGTTTTTCTTCTTCGATTATGAAACGTGGGGAACCAGCCCAGCAAAAGACAGACCGTC
CCAGTTTGCGGGTGTACGCACCGACATGGATTTCAATATCATCGGTGAGCCTCTTGTTATCTACTGCCAACCGCCTTCAG
ATTATCTTCCATCACCCGAAGCCGCGCTTATCACTGGTATCACACCTCAGAAGGCGGCAAGTAAAGGGTTACCTGAGCCG
GAATTTATTACCAAAATTCATGAGCAGTTGTCCACGCCAAACACCATCAACTTGGGTTACAATAGCATTCGATTTGATGA
CGAAGTGACGCGATATACCTGTTACCGAAATTTCATCGATCCGTATGCGTGGAGCTGGCAAAACGGCAACTCTCGCTGGG
ACTTACTCGATGTCATGCGCGCCTGTCACGCCCTTCGCCCAGAAGGTATTAATTGGCCAGAGAATGAAGAAGGTTTTATC
AGCTTTAAGCTAGAGCACTTGTCCGTTGCCAATGGCATTGAGCACGAGAATGCACACGATGCGATGGCTGACGTTATAGC
AACGATTGAAATGGCTAAAAAGGTGAAAGCCGCTCAGCCTAAGCTCTTTGATTATTTCCTTAGCATGCGCCACAAGCGCA
AACTGAACGAACTCGTCGATATCGTGAATATGACACCGCTTATGCACGTATCGGGTATGCTGGGGCGCGAATGCAATTAC
ACTAGCTGGGTGGTTCCGGTCGCTTGGCATCCAACCAACCAGAATGCGGTGATTGTTGTCGATTTAGCGAAAGACCCGCA
GCCGTTGTTGGATTTAGATGTAGAACAACTTAATGAGCGTCTCTACACCAAACATTCTGAACTTGGCCCAGACGAACTGC
CTGTACCAATCAAACTTGTCCATCTCAACAAGTGCCCTATTTTAGCTCCAGCCAAAACATTAACTGCTGAGAATGCAGCT
AACATAGGCATTGACAGAGAAAAATGCTTACAAAACCTTGAGCGACTAAGACAGCACCCTGAGATTAGAGAAAAACTCAA
TTCGCTATACAGTATCGAGAGAGAATACGAAAAGAGCGATGATGTTGATACTATGCTTTACGATGGTTTCTTCTCTCCTG
CGGCAAAGCAATCAATGGATATCATACGAGAAACTGAACCAAAGAATCTTTCCGCCCTTGATATCTCATTCAGTGACGAC
AGAATTGCTCCGCTTCTGTTCCGCTATCGCGCCAGACATTTTCCGTGGACATTGGATGAGAGTGAACAACAAAAATGGGC
AGCACACAGCCGCGAATACTTCGAAAGTCGAATAGAAGACTACATGTTGAATTTGGAAAACTTAGTTCACGAGCATGAGA
GTGACGAAAAAAAGATAGCTATCTTAAAATCTGTTTACCAATACGTTCAAAAGCTAGTATCTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.07	99.789	0.789