Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HUS11_RS10000 Genome accession   NZ_CP054844
Coordinates   2094289..2094618 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain SE5357     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2089289..2099618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUS11_RS09985 (HUS11_09990) - 2089332..2090351 (+) 1020 WP_003113413.1 MraY family glycosyltransferase -
  HUS11_RS09990 (HUS11_09995) - 2090429..2091536 (+) 1108 Protein_1988 IS3 family transposase -
  HUS11_RS09995 (HUS11_10000) - 2092101..2094098 (+) 1998 WP_202070571.1 polysaccharide biosynthesis protein -
  HUS11_RS10000 (HUS11_10005) comEA/comE1 2094289..2094618 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  HUS11_RS10010 (HUS11_10015) - 2094835..2096031 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  HUS11_RS10015 (HUS11_10020) uvrB 2096219..2098231 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=401723 HUS11_RS10000 WP_003104586.1 2094289..2094618(+) (comEA/comE1) [Pseudomonas aeruginosa strain SE5357]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=401723 HUS11_RS10000 WP_003104586.1 2094289..2094618(+) (comEA/comE1) [Pseudomonas aeruginosa strain SE5357]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385