Detailed information NTG0401718

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUS11_RS07460
• Genome accession: NZ_CP054844
• Coordinates: 1553344..1554348 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SE5357
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1548344..1559348

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUS11_RS07430 (HUS11_07435)	fghA	1548436..1549287 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
HUS11_RS07435 (HUS11_07440)	ispF	1549358..1549831 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUS11_RS07440 (HUS11_07445)	truD	1549828..1550895 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
HUS11_RS07445 (HUS11_07450)	surE	1550883..1551632 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HUS11_RS07450 (HUS11_07455)	-	1551665..1552300 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HUS11_RS07455 (HUS11_07460)	-	1552346..1553239 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
HUS11_RS07460 (HUS11_07465)	rpoS	1553344..1554348 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HUS11_RS07465 (HUS11_07470)	fdxA	1554775..1555098 (-)	324	WP_003119354.1	ferredoxin FdxA	-
HUS11_RS07470 (HUS11_07475)	mutS	1555165..1557732 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
HUS11_RS07475 (HUS11_07480)	-	1557858..1558865 (-)	1008	WP_010793357.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=401718 HUS11_RS07460 WP_003113871.1 1553344..1554348(+) (rpoS) [Pseudomonas aeruginosa strain SE5357]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=401718 HUS11_RS07460 WP_003113871.1 1553344..1554348(+) (rpoS) [Pseudomonas aeruginosa strain SE5357]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653