Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SOR_RS00125 Genome accession   NC_015291
Coordinates   23583..24920 (+) Length   445 a.a.
NCBI ID   WP_000336573.1    Uniprot ID   -
Organism   Streptococcus oralis Uo5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 18583..29920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS10275 comW 19967..20203 (+) 237 WP_000939510.1 sigma(X)-activator ComW -
  SOR_RS00105 (SOR_0021) - 20445..21731 (+) 1287 WP_041170825.1 adenylosuccinate synthase -
  SOR_RS00110 (SOR_0023) tadA 21932..22399 (+) 468 WP_001110104.1 tRNA adenosine(34) deaminase TadA -
  SOR_RS00115 (SOR_0025) - 22585..23028 (+) 444 WP_000701997.1 dUTP diphosphatase -
  SOR_RS00120 (SOR_0026) - 22988..23545 (+) 558 WP_000742055.1 histidine phosphatase family protein -
  SOR_RS00125 (SOR_0027) radA 23583..24920 (+) 1338 WP_000336573.1 DNA repair protein RadA Machinery gene
  SOR_RS00130 (SOR_0028) - 24993..25487 (+) 495 WP_013670142.1 beta-class carbonic anhydrase -
  SOR_RS00135 (SOR_0029) - 25700..26668 (+) 969 WP_000010173.1 ribose-phosphate diphosphokinase -
  SOR_RS00140 (SOR_0030) - 26788..27225 (+) 438 WP_000076472.1 CoA-binding protein -
  SOR_RS00145 (SOR_0031) - 27254..28264 (-) 1011 WP_000009124.1 YeiH family protein -
  SOR_RS00150 (SOR_0032) - 28416..29585 (+) 1170 WP_000366403.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 48645.89 Da        Isoelectric Point: 5.2532

>NTDB_id=40164 SOR_RS00125 WP_000336573.1 23583..24920(+) (radA) [Streptococcus oralis Uo5]
MCQNCEYNSPKYLGRCPNCGSWSSFVEEIEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRVLGGGVVPG
SLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRSEVERIQPDFLI
IDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILR
AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDF
NRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR
INEAAKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=40164 SOR_RS00125 WP_000336573.1 23583..24920(+) (radA) [Streptococcus oralis Uo5]
GTGTGTCAAAATTGTGAATATAATTCACCTAAGTATCTAGGGCGTTGTCCTAACTGTGGGTCTTGGTCTTCTTTTGTAGA
AGAGATTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAAAAAACCAAGCCTATGAAACTGGCTGAGG
TGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTACTTGGAGGCGGAGTGGTACCAGGG
AGTCTCGTCCTTATCGGTGGGGATCCAGGAATCGGGAAATCAACCCTTCTCCTACAAGTTTCAACCCAGCTGTCTCAAGT
AGGGACTGTTCTCTATGTCAGTGGGGAGGAGTCTGCTCAGCAGATTAAACTCCGTGCAGAGCGCTTGGGTGATATTGATA
GTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGATCTGAGGTGGAGCGCATCCAACCAGATTTTCTCATC
ATCGACTCTATCCAGACGATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGTTTCTCAGGTGCGTGAGGTGACCGC
TGAGCTTATGCAGCTGGCTAAGACCAATAACATTGCCATCTTTATCGTAGGGCATGTGACCAAGGAAGGGACCTTGGCTG
GTCCGCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAACGCCACCATACCTTCCGAATCTTACGA
GCGGTCAAAAACCGTTTTGGGTCCACTAATGAGATTGGCATCTTTGAGATGCAGTCGGGCGGATTGGTTGAGGTGCTTAA
TCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGACGGAGCGACTGGTTCATCAATTGTGGTGACTATGGAAGGAACCCGTC
CGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCAACCATGTTTGGAAATGCTAAACGCACGACGACAGGTCTTGATTTC
AATCGTGCGAGTCTGATTATGGCTGTTTTGGAAAAACGAGCAGGGCTTCTCTTGCAAAATCAGGATGCCTATCTCAAATC
TGCTGGTGGCGTGAAATTGGATGAGCCTGCCATTGACTTAGCCGTTGCAGTGGCTATTGCCTCTAGTTACAAGGACAAGC
CTACCAATCCTCAGGAATGTTTTGTGGGTGAACTGGGCTTGACCGGAGAAATTCGGCGCGTGAATCGTATCGAACAACGT
ATCAATGAAGCGGCAAAACTGGGCTTTACCAAGATTTATGTACCCAAGAATTCCTTGACAGGAATCACTCCACCCAAGGA
AATTGAAGTCATTGGTGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-417)

AAA domain (AAA_25)

(55-210)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

98.876

100

0.989
  radA Streptococcus mitis SK321

98.652

100

0.987
  radA Streptococcus pneumoniae Rx1

98.652

100

0.987
  radA Streptococcus pneumoniae D39

98.652

100

0.987
  radA Streptococcus pneumoniae R6

98.652

100

0.987
  radA Streptococcus pneumoniae TIGR4

98.652

100

0.987
  radA Bacillus subtilis subsp. subtilis str. 168

63.371

100

0.634

Multiple sequence alignment