Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HMPREF9243_RS09325 Genome accession   NC_015278
Coordinates   2003037..2004425 (-) Length   462 a.a.
NCBI ID   WP_013668812.1    Uniprot ID   F2I8N3
Organism   Aerococcus sp. Group     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1998037..2009425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9243_RS09310 (HMPREF9243_1979) - 2000033..2000734 (-) 702 WP_013669167.1 ABC transporter ATP-binding protein -
  HMPREF9243_RS09315 (HMPREF9243_1980) - 2000902..2001717 (+) 816 WP_013669022.1 Cof-type HAD-IIB family hydrolase -
  HMPREF9243_RS09320 (HMPREF9243_1981) - 2001778..2002950 (-) 1173 WP_013669750.1 PIN/TRAM domain-containing protein -
  HMPREF9243_RS09325 (HMPREF9243_1982) radA 2003037..2004425 (-) 1389 WP_013668812.1 DNA repair protein RadA Machinery gene
  HMPREF9243_RS09330 (HMPREF9243_1983) - 2004445..2004954 (-) 510 WP_041706889.1 dUTP diphosphatase -
  HMPREF9243_RS09335 (HMPREF9243_1984) - 2005123..2005308 (+) 186 WP_013669567.1 hypothetical protein -
  HMPREF9243_RS09340 (HMPREF9243_1985) - 2005772..2006221 (-) 450 WP_013668654.1 hypothetical protein -
  HMPREF9243_RS10420 - 2006382..2007807 (-) 1426 Protein_1812 IS3 family transposase -
  HMPREF9243_RS09355 (HMPREF9243_1988) - 2007856..2008944 (-) 1089 WP_013669322.1 LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50386.60 Da        Isoelectric Point: 6.6161

>NTDB_id=40163 HMPREF9243_RS09325 WP_013668812.1 2003037..2004425(-) (radA) [Aerococcus sp. Group]
MAKKKRKTVYTCQACGYESPQWYGKCPQCGAWNTLEEEVIAGKPIRQAGTEVNQKKAKPERLKEVSQAEEKRVKTGLGEF
NRVLGGGVVPGSLALIGGDPGIGKSTLLLQVAKQLSDNGGRVLYVSGEESLHQIKMRADRLGYQDADFFVYAETDLLAIQ
AAISDTQADFVVIDSIQTMVHPNNESLAGSVSQVREATGELMHIAKSSGIAIFVVGHVTKEGNIAGPRILEHMVDTVLYL
EGEKHNTFRILRAVKNRFGSTNEIGVFDMKSQGLEEVTNPSQLFLEERLMGANGSAVVASMEGTRPILTEIQALLSATAF
GNARRTASGLDYSRVTLIMAVLEKRAHLMLQNQDAYLKSTGGVKLDEPAIDLAIAIAVASSYWEKETQASDCFVGEIGLT
GEIRRISRINERIQEAEKLGFKRIFIPYGNLQGLATDSQDIEIIGAKTLTQVLKEVFPPQGR

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=40163 HMPREF9243_RS09325 WP_013668812.1 2003037..2004425(-) (radA) [Aerococcus sp. Group]
ATGGCAAAAAAGAAGCGAAAAACTGTCTACACCTGCCAGGCTTGTGGCTATGAATCACCTCAGTGGTATGGGAAATGTCC
CCAATGCGGGGCTTGGAATACCCTGGAAGAGGAAGTGATTGCGGGGAAGCCCATCCGCCAAGCTGGGACAGAGGTCAATC
AGAAAAAAGCCAAGCCTGAACGTCTCAAGGAAGTCAGCCAGGCGGAAGAAAAGCGGGTCAAGACTGGCCTAGGCGAGTTC
AACCGGGTCCTCGGTGGCGGGGTAGTCCCTGGGTCTTTGGCCCTGATTGGTGGGGATCCCGGCATTGGAAAGTCGACCCT
GCTCCTCCAGGTAGCTAAGCAATTAAGTGATAATGGTGGCCGGGTCCTCTATGTTTCCGGTGAAGAAAGTTTACATCAAA
TCAAGATGCGGGCTGACCGCCTAGGCTACCAGGATGCGGACTTTTTTGTTTATGCCGAAACCGACCTCTTGGCTATTCAA
GCGGCTATTTCAGATACCCAAGCCGACTTTGTGGTGATTGACTCCATCCAAACCATGGTCCATCCTAATAATGAATCCCT
GGCCGGCAGTGTCAGCCAGGTCAGAGAAGCGACTGGTGAACTCATGCATATTGCCAAAAGTTCTGGAATCGCCATCTTTG
TGGTCGGCCATGTGACCAAGGAAGGTAATATTGCCGGACCGCGGATTCTCGAACATATGGTGGACACGGTCTTGTACTTG
GAAGGAGAAAAGCATAACACCTTCCGGATCCTCAGAGCGGTCAAAAATCGTTTTGGCTCGACCAATGAAATCGGAGTTTT
TGATATGAAAAGCCAGGGCCTGGAAGAGGTCACCAATCCCAGCCAGCTCTTTTTAGAAGAACGGCTCATGGGGGCCAATG
GGTCCGCTGTGGTCGCTTCCATGGAAGGAACCCGGCCGATCCTAACCGAAATCCAAGCCCTCTTGTCGGCCACGGCCTTT
GGTAATGCCCGTCGCACGGCCAGTGGTTTGGATTATTCCCGGGTCACTCTCATTATGGCGGTCTTAGAGAAGCGGGCCCA
TCTCATGCTGCAGAACCAAGACGCCTATCTCAAGTCAACCGGTGGGGTTAAGCTCGATGAACCAGCCATTGACCTAGCTA
TTGCTATAGCTGTGGCTTCCAGTTACTGGGAGAAGGAGACCCAGGCCAGCGATTGCTTTGTGGGTGAGATTGGCCTAACC
GGTGAAATTCGCCGGATTTCCCGGATTAATGAACGGATCCAAGAAGCGGAAAAATTAGGATTTAAACGGATTTTTATCCC
CTATGGGAATCTCCAAGGCCTGGCGACAGATAGTCAAGACATTGAAATTATTGGTGCCAAGACCCTGACCCAAGTTCTCA
AAGAAGTCTTTCCCCCTCAGGGGCGATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-222)

Subunit ChlI of Mg-chelatase (ChlI)

(367-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2I8N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

62.719

98.701

0.619
  radA Streptococcus pneumoniae D39

62.914

98.052

0.617
  radA Streptococcus pneumoniae R6

62.914

98.052

0.617
  radA Streptococcus pneumoniae Rx1

62.914

98.052

0.617
  radA Streptococcus mitis SK321

62.914

98.052

0.617
  radA Streptococcus pneumoniae TIGR4

62.914

98.052

0.617
  radA Streptococcus mitis NCTC 12261

62.693

98.052

0.615

Multiple sequence alignment