Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GKO36_RS07440 Genome accession   NZ_CP046145
Coordinates   1476859..1477995 (-) Length   378 a.a.
NCBI ID   WP_106503125.1    Uniprot ID   -
Organism   Bacillus velezensis strain PEBA20     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1465136..1512173 1476859..1477995 within 0


Gene organization within MGE regions


Location: 1465136..1512173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKO36_RS07345 (GKO36_07345) - 1465136..1466464 (+) 1329 WP_014417660.1 PhoH family protein -
  GKO36_RS07350 (GKO36_07350) - 1466459..1466935 (-) 477 WP_007409680.1 hypothetical protein -
  GKO36_RS07355 (GKO36_07355) - 1467039..1467326 (+) 288 Protein_1403 glutaminase -
  GKO36_RS07360 (GKO36_07360) - 1467949..1468251 (+) 303 WP_106503132.1 hypothetical protein -
  GKO36_RS07365 (GKO36_07365) - 1468399..1468641 (-) 243 WP_041481751.1 hypothetical protein -
  GKO36_RS07370 (GKO36_07370) - 1468751..1469413 (+) 663 WP_106503131.1 hypothetical protein -
  GKO36_RS07375 (GKO36_07375) - 1470353..1470586 (-) 234 WP_106503129.1 hypothetical protein -
  GKO36_RS07380 (GKO36_07380) - 1470785..1471129 (-) 345 WP_101293893.1 hypothetical protein -
  GKO36_RS07385 - 1471160..1471315 (-) 156 WP_165913834.1 hypothetical protein -
  GKO36_RS07390 (GKO36_07385) - 1471305..1471670 (-) 366 WP_234034291.1 hypothetical protein -
  GKO36_RS07395 (GKO36_07390) - 1471818..1472219 (-) 402 WP_106503127.1 hypothetical protein -
  GKO36_RS07400 (GKO36_07395) - 1472399..1472617 (+) 219 WP_014417667.1 helix-turn-helix transcriptional regulator -
  GKO36_RS07405 (GKO36_07400) - 1472665..1472946 (+) 282 WP_014417668.1 hypothetical protein -
  GKO36_RS07410 (GKO36_07405) - 1472999..1473244 (-) 246 WP_105322064.1 helix-turn-helix domain-containing protein -
  GKO36_RS07415 (GKO36_07410) - 1473737..1474456 (+) 720 WP_234034290.1 hypothetical protein -
  GKO36_RS07420 (GKO36_07415) - 1474493..1474801 (-) 309 WP_234034289.1 hypothetical protein -
  GKO36_RS07425 (GKO36_07420) - 1474814..1476238 (-) 1425 WP_106503135.1 lipase -
  GKO36_RS07430 (GKO36_07425) - 1476288..1476653 (+) 366 WP_106503126.1 DUF1433 domain-containing protein -
  GKO36_RS07435 - 1476696..1476869 (-) 174 WP_169061491.1 hypothetical protein -
  GKO36_RS07440 (GKO36_07430) rapC 1476859..1477995 (-) 1137 WP_106503125.1 RapH N-terminal domain-containing protein Regulator
  GKO36_RS07445 (GKO36_07435) - 1478177..1479007 (-) 831 WP_014417674.1 SHOCT domain-containing protein -
  GKO36_RS07450 (GKO36_07440) - 1479172..1480101 (-) 930 WP_106503124.1 SH3 domain-containing protein -
  GKO36_RS07455 (GKO36_07445) - 1480192..1482831 (-) 2640 WP_106503123.1 phage tail protein -
  GKO36_RS07460 (GKO36_07450) - 1482846..1483601 (-) 756 WP_106503122.1 phage tail domain-containing protein -
  GKO36_RS07465 (GKO36_07455) - 1483652..1490710 (-) 7059 Protein_1425 phage tail tape measure protein -
  GKO36_RS07470 (GKO36_07460) - 1491452..1492585 (-) 1134 WP_106503054.1 GIY-YIG nuclease family protein -
  GKO36_RS07475 (GKO36_07465) - 1492760..1493638 (+) 879 WP_106503055.1 tyrosine-type recombinase/integrase -
  GKO36_RS07480 - 1493751..1495253 (+) 1503 WP_199792719.1 hypothetical protein -
  GKO36_RS07485 - 1495349..1495516 (-) 168 WP_165913832.1 hypothetical protein -
  GKO36_RS07490 (GKO36_07475) - 1495534..1495950 (-) 417 WP_106503056.1 hypothetical protein -
  GKO36_RS07495 (GKO36_07480) - 1495950..1496435 (-) 486 WP_106503057.1 hypothetical protein -
  GKO36_RS07500 (GKO36_07485) - 1496432..1496590 (-) 159 WP_014417684.1 XkdX family protein -
  GKO36_RS07505 (GKO36_07490) - 1496591..1496860 (-) 270 WP_106503058.1 hypothetical protein -
  GKO36_RS07510 (GKO36_07495) - 1496875..1498182 (-) 1308 WP_106503059.1 hypothetical protein -
  GKO36_RS07515 (GKO36_07500) - 1498221..1498790 (-) 570 WP_014417686.1 HNH endonuclease -
  GKO36_RS07520 (GKO36_07505) - 1498801..1498995 (-) 195 WP_014471790.1 hypothetical protein -
  GKO36_RS07525 (GKO36_07510) - 1499612..1502458 (-) 2847 WP_234034277.1 hypothetical protein -
  GKO36_RS07530 (GKO36_07515) - 1502476..1504380 (-) 1905 WP_105322071.1 hypothetical protein -
  GKO36_RS07535 (GKO36_07520) - 1504695..1505657 (+) 963 WP_014417689.1 AimR family lysis-lysogeny pheromone receptor -
  GKO36_RS07540 (GKO36_07525) - 1505701..1505823 (+) 123 WP_134998052.1 lysogeny pheromone AimP family peptide -
  GKO36_RS07545 (GKO36_07530) - 1506017..1506898 (+) 882 WP_106503060.1 hypothetical protein -
  GKO36_RS07550 (GKO36_07535) - 1506913..1507413 (+) 501 WP_234034278.1 hypothetical protein -
  GKO36_RS07555 (GKO36_07540) - 1507441..1508274 (+) 834 WP_106503061.1 glycosyl transferase family 2 -
  GKO36_RS21465 - 1508307..1509227 (+) 921 WP_234034279.1 hypothetical protein -
  GKO36_RS07565 (GKO36_07550) - 1509215..1509751 (+) 537 WP_106503062.1 hypothetical protein -
  GKO36_RS07570 (GKO36_07555) - 1509748..1510197 (+) 450 WP_106503063.1 hypothetical protein -
  GKO36_RS07575 (GKO36_07560) - 1510464..1512173 (+) 1710 WP_106503064.1 recombinase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44579.90 Da        Isoelectric Point: 4.9328

>NTDB_id=401623 GKO36_RS07440 WP_106503125.1 1476859..1477995(-) (rapC) [Bacillus velezensis strain PEBA20]
MKQLISSSKVGVKINEWYKYIRMFSVPDAEVLKSEVEQEINAMEENQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESSQAKLKGILEYYFNFFRGMYEFEEYEYLKAISFYKQAEKKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIESYRAHETYSVREIQCSFVIGLNYLDMEYPEKAIPHFQKAYKKALEIDMPRLAGSALYNLGISSFSEEKFDEAI
EYFKEGVLIYEQNGYEHANRLLDILFMLAKTNFKVNKKTDGTAAYKHGLSLAKNLNDEVLTKMFDSLNALYIDDNKETLN
EILAYLEFKTMFSDVEDLATDAAKYYTKNEDHKAAGLFYEKVLYAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=401623 GKO36_RS07440 WP_106503125.1 1476859..1477995(-) (rapC) [Bacillus velezensis strain PEBA20]
TTGAAACAGTTAATCTCCTCATCCAAAGTCGGCGTGAAGATTAATGAGTGGTACAAGTATATTCGCATGTTTAGTGTTCC
TGATGCAGAGGTGCTGAAATCAGAAGTGGAACAAGAAATAAACGCTATGGAAGAAAATCAGGATTTATTGTTGTACTATT
CCCTCATGTGTTTTAGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTGAGATTTCA
GACTTATTAGAAAAGATCGAAAGTAGCCAAGCTAAATTGAAAGGAATTCTTGAATATTACTTTAACTTTTTCCGTGGGAT
GTATGAATTTGAAGAATACGAATATCTTAAAGCGATAAGTTTTTACAAACAAGCGGAAAAGAAGTTGTCACTTGTAGCCG
ACGAAATTGAGCGAGCGGAGTTTCATTACAAAGTCGCTGAAATTTATTATCACATGAAACAAACACACATGTCGATGCAC
CATATTGTTCAAGCAATCGAAAGCTACAGAGCGCATGAAACCTATTCTGTTAGAGAAATTCAATGTTCTTTTGTTATTGG
TCTAAATTATTTAGACATGGAGTATCCAGAAAAGGCTATCCCTCATTTTCAAAAAGCTTATAAAAAAGCACTTGAAATTG
ATATGCCAAGATTAGCTGGATCCGCTCTTTATAATTTAGGGATCTCCTCGTTTTCTGAAGAAAAGTTCGATGAGGCTATT
GAGTATTTCAAAGAAGGAGTATTGATCTATGAGCAGAACGGATATGAACATGCTAACCGCTTATTAGACATTCTTTTCAT
GTTAGCGAAAACGAACTTTAAGGTAAATAAGAAAACTGACGGAACAGCTGCTTATAAACATGGACTGTCATTGGCTAAAA
ACTTAAATGATGAAGTATTAACCAAAATGTTTGATTCCCTGAATGCCCTTTACATTGACGATAACAAAGAAACACTAAAT
GAGATTCTTGCTTATTTAGAATTTAAAACAATGTTTTCAGATGTGGAGGACTTAGCAACCGACGCAGCGAAGTATTATAC
AAAAAATGAAGACCATAAAGCGGCTGGATTATTTTATGAGAAAGTGCTTTATGCCCAAAAACAAATCCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(222-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.481
  rapF Bacillus subtilis subsp. subtilis str. 168

44.882

100

0.452

Multiple sequence alignment