Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   GKC70_RS17030 Genome accession   NZ_CP046139
Coordinates   3733386..3735608 (-) Length   740 a.a.
NCBI ID   WP_342649362.1    Uniprot ID   -
Organism   Pseudomonas sp. REB1044     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3728386..3740608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC70_RS16995 (GKC70_16785) murB 3728745..3729764 (-) 1020 WP_342649359.1 UDP-N-acetylmuramate dehydrogenase -
  GKC70_RS17000 (GKC70_16790) - 3729761..3730225 (-) 465 WP_342649360.1 low molecular weight protein-tyrosine-phosphatase -
  GKC70_RS17005 (GKC70_16795) kdsB 3730225..3730988 (-) 764 Protein_3335 3-deoxy-manno-octulosonate cytidylyltransferase -
  GKC70_RS17010 (GKC70_16800) - 3730985..3731170 (-) 186 WP_029612980.1 Trm112 family protein -
  GKC70_RS17015 (GKC70_16805) lpxK 3731212..3732207 (-) 996 WP_342649361.1 tetraacyldisaccharide 4'-kinase -
  GKC70_RS17020 (GKC70_16810) - 3732207..3732641 (-) 435 WP_029612978.1 biopolymer transporter ExbD -
  GKC70_RS17025 (GKC70_16815) - 3732638..3733272 (-) 635 Protein_3339 MotA/TolQ/ExbB proton channel family protein -
  GKC70_RS17030 (GKC70_16820) comA 3733386..3735608 (-) 2223 WP_342649362.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GKC70_RS17035 (GKC70_16825) - 3735751..3736377 (+) 627 WP_342649363.1 DUF2062 domain-containing protein -
  GKC70_RS17040 (GKC70_16830) - 3736261..3737040 (-) 780 WP_029612976.1 ABC transporter permease -
  GKC70_RS17045 (GKC70_16835) - 3737037..3737969 (-) 933 WP_342649364.1 ABC transporter ATP-binding protein -
  GKC70_RS17050 (GKC70_16840) - 3738116..3738738 (-) 623 Protein_3344 glutathione S-transferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80673.54 Da        Isoelectric Point: 11.1875

>NTDB_id=401583 GKC70_RS17030 WP_342649362.1 3733386..3735608(-) (comA) [Pseudomonas sp. REB1044]
MRTGMFALVLGLLSLGLWPALPSVGWLFLLSLLALLCLRSRAWPLGWLLLGVCWACWSAQQALDDRLASGLDGRTLWLEG
RVVGLPAHSGGTVRFDLEDAQSRRGALPRHVQLSWFGGPTIRAGERWRLAVTLRQPSGLLNPHGADREAMFLARRIGATG
TVKAGERLEPVRGGWRDRLRQRLLAVDAHGRESVLAALLLGDGSGLTRTDWQTLQATGTVHLLVISGQHIGLLAGLIYGV
IAGLARLGVWPGRWPWLPWACGLAMASALGYGALAGFQVPVQRACLMLATVLLWRLRFRHLGAFFPLLLALTGVLLLEPL
ASLLPGFWLSFTAVATLIYCFSGRLGRWRPWQAWSRAQWVIAIGLLPALLALGLPISLSAPLVNLLAVPWISLAVLPLAL
LGTALLPLTGVGESLLWVAGGLIDIMFRTLGLLAEWQPAWLPRPLPLWRWSLVCVGALLLLSPRGAPLKGLGAVMLLALW
TPRDHIPHGQAEIWQLDVGQGLAVLLRTRHHSLLYDAGPATRFSDLGESVVLPTLRKLGVDQLNVMLISHAHADHAGGAA
AVYRGLPIVRVLAGEPLALPASLQAQACASGERWEWDGVHFSLWHWPQGKSSNDRSCVLLVEAQGERLLLAGDMETAAER
AWLKENVSPRIDWLQSPHHGSRSSSTEPFIRATAPRGVLISRGRHNMFGHPHPQVIERYRRHGLTVHDTALHGALRLSLG
AHGDVEGLGLQRRFWRGPPS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=401583 GKC70_RS17030 WP_342649362.1 3733386..3735608(-) (comA) [Pseudomonas sp. REB1044]
ATGCGCACAGGGATGTTTGCGCTGGTGCTCGGGTTGTTGAGCCTGGGTTTGTGGCCTGCCTTGCCATCGGTCGGGTGGCT
TTTCCTTCTGTCGTTGTTGGCGCTGTTGTGCCTGCGCAGCCGCGCCTGGCCGCTGGGCTGGCTGTTGCTGGGCGTGTGTT
GGGCCTGCTGGTCGGCGCAGCAGGCCCTGGACGATCGCCTGGCCAGCGGTCTGGATGGCCGCACCTTGTGGTTGGAGGGC
AGGGTGGTGGGGCTTCCGGCACACTCCGGCGGCACTGTGCGCTTCGACCTTGAGGATGCGCAGTCGCGGCGTGGTGCGCT
GCCTCGGCACGTCCAGTTGAGTTGGTTCGGCGGCCCGACGATCAGGGCGGGTGAACGCTGGCGACTGGCGGTGACACTCA
GGCAGCCGAGCGGTCTGCTTAACCCCCATGGTGCGGATCGCGAAGCGATGTTTCTGGCTCGTCGCATCGGTGCCACCGGA
ACAGTCAAGGCCGGCGAGAGGCTGGAGCCGGTCCGAGGCGGCTGGCGGGATCGCTTGCGTCAGCGGCTGCTGGCAGTGGA
TGCGCACGGACGTGAATCGGTGCTGGCGGCTTTGCTGCTGGGGGATGGCTCGGGCCTGACGCGGACGGACTGGCAAACTT
TGCAGGCCACTGGCACCGTGCATTTGCTGGTTATTTCCGGACAACACATCGGTCTGCTGGCAGGGCTGATATACGGCGTA
ATTGCCGGCTTGGCTCGTCTAGGTGTGTGGCCTGGGCGCTGGCCGTGGCTACCTTGGGCGTGTGGTCTGGCGATGGCTTC
GGCGCTGGGCTACGGGGCGCTGGCTGGATTCCAGGTGCCCGTGCAGCGTGCCTGCCTGATGCTGGCTACGGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACTTGGGCGCCTTCTTTCCGCTATTGCTGGCGCTGACCGGTGTGCTGCTGCTTGAGCCGCTT
GCAAGCCTGCTGCCAGGTTTCTGGTTGTCCTTCACTGCCGTGGCCACCTTGATCTACTGTTTCAGTGGACGTCTGGGCCG
CTGGCGTCCTTGGCAAGCCTGGAGTCGCGCGCAATGGGTGATCGCGATCGGTTTGCTGCCTGCATTGCTGGCGCTGGGCC
TGCCGATCAGCCTCAGCGCACCGTTGGTCAATCTGCTGGCCGTGCCCTGGATCAGCCTGGCTGTTTTACCTCTGGCGTTG
CTCGGCACGGCCTTGTTACCGCTGACGGGCGTCGGCGAGAGTTTGTTATGGGTGGCCGGCGGGTTGATCGACATCATGTT
CCGCACGCTCGGCCTGTTGGCCGAATGGCAACCAGCGTGGCTGCCTCGTCCCTTGCCGCTGTGGCGTTGGAGTCTGGTGT
GTGTCGGTGCGCTGCTGCTGCTGTCACCGCGCGGCGCGCCGCTCAAGGGGCTGGGGGCGGTGATGCTCCTGGCGCTATGG
ACGCCCCGCGATCACATCCCGCATGGACAGGCAGAGATTTGGCAGTTGGACGTCGGCCAAGGCCTGGCGGTACTGCTGCG
TACGCGGCATCACAGCCTGCTCTACGACGCCGGGCCAGCCACCCGTTTCAGTGATCTTGGGGAAAGCGTGGTACTGCCAA
CGTTGCGCAAGCTCGGTGTCGATCAGCTCAATGTGATGTTGATCAGTCATGCCCATGCCGACCACGCGGGCGGTGCTGCG
GCGGTGTATCGAGGACTGCCGATCGTGCGCGTGCTGGCAGGCGAGCCGCTGGCGCTGCCAGCCTCGCTGCAGGCGCAAGC
GTGCGCCAGCGGCGAGCGCTGGGAATGGGACGGCGTGCATTTCTCGCTGTGGCACTGGCCGCAGGGCAAGAGCAGCAACG
ACCGCTCCTGTGTATTGTTGGTCGAGGCTCAGGGCGAGCGCTTACTGCTCGCTGGCGATATGGAGACGGCCGCCGAGCGC
GCCTGGCTGAAAGAAAACGTATCGCCACGCATCGACTGGCTGCAGTCACCGCATCACGGCAGCCGCAGTTCCTCCACCGA
GCCGTTCATACGCGCAACGGCGCCACGTGGCGTATTGATTTCCCGAGGGCGACACAACATGTTCGGTCACCCTCATCCCC
AAGTGATCGAACGCTATCGACGGCATGGTCTGACCGTGCATGATACGGCTCTGCATGGCGCGTTGCGCCTGTCGCTGGGT
GCCCATGGCGACGTCGAGGGGCTTGGTCTGCAAAGGCGTTTCTGGCGCGGGCCACCGTCCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-461)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.61

97.027

0.578

Multiple sequence alignment