Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GKC68_RS18815 Genome accession   NZ_CP046137
Coordinates   3908292..3909674 (-) Length   460 a.a.
NCBI ID   WP_028724603.1    Uniprot ID   A0AAJ1CWQ8
Organism   Pantoea sp. RSPAM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3903292..3914674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC68_RS18790 (GKC68_18685) - 3903733..3904422 (-) 690 WP_028724608.1 molecular chaperone -
  GKC68_RS18795 (GKC68_18690) - 3904462..3905049 (-) 588 WP_263793434.1 fimbrial protein -
  GKC68_RS18800 (GKC68_18695) - 3905257..3905706 (-) 450 WP_028724606.1 hypothetical protein -
  GKC68_RS18805 (GKC68_18700) - 3905703..3906635 (-) 933 WP_342656397.1 winged helix-turn-helix domain-containing protein -
  GKC68_RS18810 (GKC68_18705) nadR 3906961..3908199 (-) 1239 WP_028724604.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  GKC68_RS18815 (GKC68_18710) radA 3908292..3909674 (-) 1383 WP_028724603.1 DNA repair protein RadA Machinery gene
  GKC68_RS18820 (GKC68_18715) serB 3909688..3910665 (-) 978 WP_014595282.1 phosphoserine phosphatase -
  GKC68_RS18825 (GKC68_18720) - 3910773..3911441 (+) 669 WP_028724602.1 YtjB family periplasmic protein -
  GKC68_RS18830 (GKC68_18725) yjjG 3911570..3912250 (-) 681 WP_047715047.1 pyrimidine 5'-nucleotidase -
  GKC68_RS18835 (GKC68_18730) rimI 3912270..3912710 (-) 441 WP_342656398.1 ribosomal protein S18-alanine N-acetyltransferase -
  GKC68_RS18840 (GKC68_18735) - 3912682..3913092 (-) 411 WP_028724599.1 DNA polymerase III subunit psi -
  GKC68_RS18845 (GKC68_18740) rsmC 3913198..3914229 (+) 1032 WP_342656399.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49437.09 Da        Isoelectric Point: 7.6663

>NTDB_id=401566 GKC68_RS18815 WP_028724603.1 3908292..3909674(-) (radA) [Pantoea sp. RSPAM1]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAQTMKTLYVTGEESLQQVAMRAHRLGLPTENLNMLSETSIE
QICLIAEQEAPQIMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIEGMRVYSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=401566 GKC68_RS18815 WP_028724603.1 3908292..3909674(-) (radA) [Pantoea sp. RSPAM1]
TTGGCCAAAGCGGCAAAACGCGCATTTGTTTGTAACGAGTGTGGCGCAGATTATCCGCGCTGGCAGGGGCAATGCAGCGC
CTGTCACGCCTGGAACACCATTACCGAGGTACGGATTGCCGCCTCACCCGCTGCAGCGCGCAATGAGCGCCTCAGCGGTT
ATGCGGGCAGTGCCGGGACCAGTCGGGTGCAAAAGCTGTCCGAAATCAGTCTGGAAGCCTTGCCCCGTTTCTCGACCAGC
TTTAAAGAATTTGACCGTGTGCTGGGCGGTGGCGTGGTGCCCGGCAGTGCCATTCTGATTGGTGGTAATCCCGGGGCCGG
TAAATCCACTTTGTTGCTGCAGGTCATGTGCCGCTTAGCGCAGACCATGAAAACCCTGTATGTCACCGGCGAAGAATCCT
TACAGCAGGTGGCAATGCGCGCCCATCGGCTGGGTTTGCCGACTGAAAACCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATCTGTCTGATCGCTGAGCAGGAAGCGCCGCAAATCATGGTCATCGACTCCATCCAGGTGATGCACATGGCCGATAT
CCAGTCTTCACCCGGCAGCGTGGCCCAGGTGCGCGAAACCGCCGCTTATCTGACGCGCTTTGCCAAAACCCGCGGCGTGG
CGATTATCATGGTGGGCCACGTCACCAAAGACGGATCGCTGGCCGGGCCGAAGGTCCTTGAGCACTGTATTGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCGCGTTTCCGCACCTTGCGCAGCCATAAAAACCGTTTTGGTGCCGTGAATGAACT
GGGGGTTTTTGCCATGACGGAGCAGGGCATGCGAGAGGTGAGCAATCCTTCGGCCATTTTCCTGTCGCGCGGTGAAGAGA
TTACATCGGGCAGTTCGGTCATGGTCCTGTGGGAAGGAACCCGGCCATTGCTGGTCGAGATTCAGGCGCTGGTGGACCAT
TCGATGATGGGGAATCCCCGACGTGTTGCCGTTGGGCTTGAACAAAACCGCCTGGCGATTCTGCTGGCGGTACTGCATCG
TCACGGTGGATTGCAAATGGCGGATCAGGATGTGTTCGTCAACGTCGTGGGCGGCGTGAAAGTCACAGAAACCAGCGCCG
ACCTGGCGCTGATGCTGTCAATGGTTTCCAGCCTGCGCGATCGCCCCTTGCCGCAGGATCTGGTTATCTTTGGCGAAGTC
GGGCTGGCCGGCGAAATTCGTCCGGTACCCAGCGGTCAGGAACGGATCTCAGAAGCGGCGAAACATGGCTTCAAACGGGC
GATTGTGCCTGCGGGTAACGCGCCGAAAAAGCCGATTGAGGGCATGCGCGTCTACAGCGCGAAAAAGCTGGCGGATGCGC
TGGCGATTCTCGATGATCTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(87-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.487
  radA Streptococcus mitis NCTC 12261

43.516

98.913

0.43
  radA Streptococcus pneumoniae Rx1

44.78

93.696

0.42
  radA Streptococcus pneumoniae D39

44.78

93.696

0.42
  radA Streptococcus pneumoniae R6

44.78

93.696

0.42
  radA Streptococcus pneumoniae TIGR4

44.78

93.696

0.42
  radA Streptococcus mitis SK321

44.78

93.696

0.42

Multiple sequence alignment