Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GKC13_RS04250 Genome accession   NZ_CP046134
Coordinates   816094..816906 (+) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 811094..821906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS04225 (GKC13_04260) - 811193..811891 (-) 699 WP_014608374.1 amino acid ABC transporter permease -
  GKC13_RS04230 (GKC13_04265) - 811909..812742 (-) 834 WP_014608373.1 transporter substrate-binding domain-containing protein -
  GKC13_RS04235 (GKC13_04270) - 812754..813521 (-) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  GKC13_RS04240 (GKC13_04275) vicR 814048..814755 (+) 708 WP_011681206.1 response regulator YycF Regulator
  GKC13_RS04245 (GKC13_04280) vicK 814748..816088 (+) 1341 WP_011681205.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GKC13_RS04250 (GKC13_04285) vicX 816094..816906 (+) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  GKC13_RS04255 (GKC13_04290) - 816966..817327 (+) 362 Protein_837 YbaN family protein -
  GKC13_RS04260 (GKC13_04295) - 817379..818593 (-) 1215 WP_004197368.1 aminoacyltransferase -
  GKC13_RS04265 (GKC13_04300) yidA 818595..819404 (-) 810 WP_180479435.1 sugar-phosphatase -
  GKC13_RS04270 (GKC13_04305) - 819612..820524 (+) 913 Protein_840 GNAT family N-acetyltransferase -
  GKC13_RS04275 (GKC13_04310) - 820582..820968 (+) 387 WP_002953113.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=401517 GKC13_RS04250 WP_011681204.1 816094..816906(+) (vicX) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=401517 GKC13_RS04250 WP_011681204.1 816094..816906(+) (vicX) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774

Multiple sequence alignment