Detailed information NTG0401474

Bioinformatically predicted

Overview

• Name: pepF
• Type: Regulator
• Locus tag: GKC17_RS00975
• Genome accession: NZ_CP046131
• Coordinates: 196964..198766 (-)
• Length: 600 a.a.
• NCBI ID: WP_016396185.1
• Uniprot ID: A0A3G6JEL1
• Organism: Lactobacillus delbrueckii subsp. lactis strain MAG_rmk202_ldel
• Function: degradation of XIP; competence shut-off (predicted from homology) Competence regulation

Genomic Context

Location: 191964..203766

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GKC17_RS00950 (GKC17_00960)	-	192148..192945 (+)	798	WP_003621140.1	metal ABC transporter permease	-
GKC17_RS00955 (GKC17_00965)	-	193090..193419 (+)	330	WP_231520595.1	zinc-ribbon domain-containing protein	-
GKC17_RS10870	-	193337..193747 (+)	411	WP_231520590.1	hypothetical protein	-
GKC17_RS00965 (GKC17_00975)	-	194000..195538 (+)	1539	WP_138490664.1	L-lactate permease	-
GKC17_RS00970 (GKC17_00980)	-	195668..196894 (+)	1227	WP_035165322.1	lactate oxidase	-
GKC17_RS00975 (GKC17_00985)	pepF	196964..198766 (-)	1803	WP_016396185.1	oligoendopeptidase F	Regulator
GKC17_RS00980 (GKC17_00990)	-	199088..200386 (-)	1299	WP_138490663.1	RNA-guided endonuclease TnpB family protein	-
GKC17_RS00985 (GKC17_00995)	-	200771..201910 (+)	1140	WP_138490662.1	LCP family protein	-
GKC17_RS00990 (GKC17_01000)	-	202029..202406 (+)	378	WP_002879494.1	hypothetical protein	-

Sequence

Protein

• Length: 600 a.a.
• Molecular weight: 68346.08 Da
• Isoelectric Point: 4.4406

>NTDB_id=401474 GKC17_RS00975 WP_016396185.1 196964..198766(-) (pepF) [Lactobacillus delbrueckii subsp. lactis strain MAG_rmk202_ldel]
MEIPYRSEVPKEQTWDLTRVFKTEADWEDAFKAVKQEVKALPALEDGFTESAAVLYDRLTQIFAVDRRLSKIYVYASMAS
DVDTSNQKKLALNSRAQSLAAEYQAAVAFIQPAVLALGKEGLDAFFKEEPRLENYRHYLEQIVKQEEHVLPAEEEKLVSA
AGDALSASANTFNVLTNSDLQFPYIEDEDGEAVELTEANYDILIQSQNREVREDAFDALYAGYGQFASTFASTLAGNVKA
HNFDAQTHHYQDALAAALSENNIPVDVYNQLLTSVHKHLDLLHRYVNLREEILDLKGDLQMWDMYVPITGKPSLSYTFAE
AKAQAREALQVLGEDYVKHVDYLFNNRCIDHVANMHKQSGAYSGGAYDTDAYELLNWQGDLDSLYTLVHETGHSVHSMYT
RENQPYVYGDYPIFVAEIASTTNENLLTNYFLDRVTDPKTRAFLLNYYLSSFKGTVYRQTQFAEFEKFIHESDQAGEALT
ADYLCGFYDRLNQQYYGPAISLGSDIDLEWARIPHFYYNFYVYQYATGFAAATALANKITYGSQEDKEKYLDFLKSGSSD
YPINIMQKAGVDMTKSDYLEDAFKVFTERLDEFTDLIKKL

Nucleotide

• Length: 1803 bp

>NTDB_id=401474 GKC17_RS00975 WP_016396185.1 196964..198766(-) (pepF) [Lactobacillus delbrueckii subsp. lactis strain MAG_rmk202_ldel]
ATGGAAATCCCTTATCGCAGTGAGGTCCCCAAAGAGCAGACCTGGGACTTGACCCGGGTCTTCAAGACTGAGGCGGACTG
GGAGGACGCCTTTAAAGCTGTCAAGCAGGAAGTCAAGGCCCTGCCGGCCTTGGAAGACGGCTTTACGGAGAGCGCGGCCG
TCCTCTATGACCGCTTGACCCAGATTTTTGCCGTTGACCGCCGCCTGTCCAAGATCTACGTCTATGCCAGCATGGCCAGC
GACGTCGACACCAGCAACCAGAAGAAGCTGGCCCTCAATTCCCGCGCCCAGAGCCTGGCCGCTGAATACCAGGCAGCTGT
TGCCTTCATTCAGCCGGCTGTTTTAGCCTTGGGTAAAGAGGGCCTGGACGCCTTTTTCAAGGAAGAGCCAAGACTGGAAA
ACTACCGGCACTATTTGGAACAGATCGTCAAGCAGGAAGAGCACGTTTTGCCAGCTGAAGAGGAGAAGCTGGTATCGGCG
GCCGGGGATGCCCTGTCAGCTTCGGCCAACACCTTCAACGTCTTGACCAACTCCGATTTGCAATTCCCTTACATTGAAGA
TGAAGACGGGGAAGCAGTGGAACTGACGGAAGCCAACTACGACATCTTGATCCAGTCCCAGAACCGGGAAGTCAGAGAGG
ACGCCTTTGACGCCCTTTACGCTGGCTACGGCCAGTTCGCGTCAACTTTTGCCTCAACCTTGGCCGGCAATGTCAAGGCC
CACAACTTTGATGCCCAGACCCACCACTACCAGGACGCCTTAGCCGCGGCTCTGTCAGAAAACAACATCCCTGTCGACGT
CTACAATCAGCTTTTGACTAGCGTCCACAAGCACCTGGACCTCCTCCACCGCTATGTCAACTTGCGCGAAGAGATCCTGG
ACCTGAAGGGCGACCTGCAAATGTGGGACATGTACGTGCCGATCACGGGCAAGCCAAGCCTCAGCTACACTTTCGCTGAA
GCCAAGGCCCAGGCCAGAGAGGCCCTGCAGGTTTTGGGCGAGGACTATGTCAAACACGTCGACTACCTCTTCAATAACCG
CTGCATCGACCACGTGGCTAACATGCACAAGCAAAGCGGGGCCTACTCCGGCGGGGCTTATGACACCGACGCCTATGAGC
TCTTGAACTGGCAGGGGGACCTGGATTCCCTCTACACCCTGGTCCACGAGACCGGCCACTCAGTCCACAGCATGTACACC
CGGGAAAACCAGCCATACGTGTACGGGGACTATCCGATCTTTGTCGCGGAAATTGCCTCAACGACCAATGAAAACCTGCT
GACCAACTACTTCCTGGACCGGGTGACGGATCCAAAGACCCGGGCCTTCTTGCTCAACTACTACTTGAGCTCCTTTAAGG
GAACGGTCTACCGGCAGACCCAGTTCGCGGAATTCGAGAAGTTCATTCATGAAAGCGACCAGGCGGGTGAAGCCTTGACG
GCTGACTACCTGTGCGGCTTCTACGACCGGCTCAACCAGCAGTACTACGGCCCGGCGATCAGCCTGGGCAGCGACATCGA
CCTGGAATGGGCCCGGATCCCCCACTTCTATTACAACTTCTACGTCTACCAGTACGCGACCGGCTTTGCCGCGGCGACTG
CCCTGGCTAACAAGATTACTTACGGCAGCCAGGAAGACAAGGAGAAGTACCTAGACTTCCTTAAGTCCGGCTCCAGCGAC
TACCCGATCAACATCATGCAGAAGGCCGGCGTCGACATGACCAAGTCCGACTACCTGGAAGATGCCTTCAAGGTCTTTAC
GGAAAGACTGGATGAATTTACTGACTTGATCAAAAAATTGTAG

Domains

Predicted by InterproScan.

• Oligopeptidase F (Peptidase_M3_N) (115-182)

• Peptidase family M3 (Peptidase_M3) (203-584)

3D structure

• AlphaFold DB: A0A3G6JEL1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pepF	Streptococcus salivarius strain HSISS4	50	99	0.495