Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | GKC27_RS11200 | Genome accession | NZ_CP046130 |
| Coordinates | 2225086..2225421 (+) | Length | 111 a.a. |
| NCBI ID | WP_012010555.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain DSM 27 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2220086..2230421
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKC27_RS11180 (GKC27_11075) | gcvT | 2220563..2221660 (-) | 1098 | WP_003215703.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| GKC27_RS11185 (GKC27_11080) | - | 2222223..2223893 (+) | 1671 | WP_034620820.1 | SNF2-related protein | - |
| GKC27_RS11190 (GKC27_11085) | - | 2223908..2224705 (+) | 798 | WP_003217448.1 | YqhG family protein | - |
| GKC27_RS11195 (GKC27_11090) | - | 2224888..2225052 (+) | 165 | WP_003217357.1 | anti-repressor SinI family protein | - |
| GKC27_RS11200 (GKC27_11095) | sinR | 2225086..2225421 (+) | 336 | WP_012010555.1 | transcriptional regulator SinR | Regulator |
| GKC27_RS11205 (GKC27_11100) | - | 2225489..2226289 (-) | 801 | WP_003217403.1 | TasA family protein | - |
| GKC27_RS11210 (GKC27_11105) | - | 2226347..2226919 (-) | 573 | WP_003217306.1 | signal peptidase I | - |
| GKC27_RS11215 (GKC27_11110) | tapA | 2226971..2227498 (-) | 528 | WP_003217325.1 | amyloid fiber anchoring/assembly protein TapA | - |
| GKC27_RS11220 (GKC27_11115) | - | 2227798..2228076 (+) | 279 | WP_003217457.1 | DUF3889 domain-containing protein | - |
| GKC27_RS11225 (GKC27_11120) | - | 2228110..2228304 (-) | 195 | WP_034620826.1 | YqzE family protein | - |
| GKC27_RS11230 (GKC27_11125) | comGG | 2228364..2228747 (-) | 384 | WP_003217479.1 | competence type IV pilus minor pilin ComGG | - |
| GKC27_RS11235 (GKC27_11130) | comGF | 2228744..2229274 (-) | 531 | WP_226803663.1 | competence type IV pilus minor pilin ComGF | - |
| GKC27_RS11240 | comGE | 2229183..2229500 (-) | 318 | WP_003217390.1 | competence type IV pilus minor pilin ComGE | - |
| GKC27_RS11245 (GKC27_11135) | comGD | 2229484..2229930 (-) | 447 | WP_003217424.1 | competence type IV pilus minor pilin ComGD | - |
| GKC27_RS11250 (GKC27_11140) | comGC | 2229923..2230216 (-) | 294 | WP_003217322.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 13001.59 Da Isoelectric Point: 5.2831
>NTDB_id=401446 GKC27_RS11200 WP_012010555.1 2225086..2225421(+) (sinR) [Bacillus pumilus strain DSM 27]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=401446 GKC27_RS11200 WP_012010555.1 2225086..2225421(+) (sinR) [Bacillus pumilus strain DSM 27]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |