Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GKC27_RS06990 Genome accession   NZ_CP046130
Coordinates   1405698..1405976 (+) Length   92 a.a.
NCBI ID   WP_003211634.1    Uniprot ID   A0AB34QPU8
Organism   Bacillus pumilus strain DSM 27     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1400698..1410976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC27_RS06965 (GKC27_06885) - 1400789..1401064 (-) 276 WP_034619939.1 hypothetical protein -
  GKC27_RS06970 (GKC27_06890) - 1401208..1402827 (+) 1620 WP_003212114.1 ATP-binding cassette domain-containing protein -
  GKC27_RS06975 (GKC27_06895) - 1402869..1404101 (-) 1233 WP_003211185.1 aminopeptidase -
  GKC27_RS06980 - 1404208..1404339 (-) 132 WP_003210922.1 protein YkpC -
  GKC27_RS06985 (GKC27_06900) mreBH 1404414..1405421 (-) 1008 WP_003211642.1 rod-share determining protein MreBH -
  GKC27_RS06990 (GKC27_06905) abrB 1405698..1405976 (+) 279 WP_003211634.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GKC27_RS06995 (GKC27_06910) - 1406119..1407429 (+) 1311 WP_003211426.1 ATP-binding protein -
  GKC27_RS07000 (GKC27_06915) - 1407434..1408270 (+) 837 WP_003212083.1 gamma-glutamylcyclotransferase family protein -
  GKC27_RS07005 (GKC27_06920) - 1408308..1408976 (+) 669 WP_003211815.1 TrkA family potassium uptake protein -
  GKC27_RS07010 (GKC27_06925) ade 1409239..1410969 (+) 1731 WP_003210985.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=401437 GKC27_RS06990 WP_003211634.1 1405698..1405976(+) (abrB) [Bacillus pumilus strain DSM 27]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYKPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=401437 GKC27_RS06990 WP_003211634.1 1405698..1405976(+) (abrB) [Bacillus pumilus strain DSM 27]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTAAGAAGAGCACTTGA
TATTGCCATTAAAGACAGTATGGAATTTTTTATAGATGGGGAGAAAATCGTCTTGAAAAAATACAAGCCAGAGGGTGTTT
GCCTCATGACTGGTGAGATTACATCAGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTCTTAAAAGAGCTACAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

100

0.565

Multiple sequence alignment