Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GKC27_RS06880 Genome accession   NZ_CP046130
Coordinates   1385713..1386294 (+) Length   193 a.a.
NCBI ID   WP_003210851.1    Uniprot ID   -
Organism   Bacillus pumilus strain DSM 27     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1380713..1391294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC27_RS06850 (GKC27_06770) dapD 1380835..1381545 (+) 711 WP_003212204.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  GKC27_RS06855 (GKC27_06775) - 1381580..1382758 (+) 1179 WP_050782659.1 N-acetyldiaminopimelate deacetylase -
  GKC27_RS06860 (GKC27_06780) - 1382809..1383051 (+) 243 WP_003211408.1 YkuS family protein -
  GKC27_RS06865 (GKC27_06785) - 1383081..1383887 (-) 807 WP_003211570.1 mechanosensitive ion channel family protein -
  GKC27_RS06870 (GKC27_06790) ahpA 1384159..1384701 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  GKC27_RS06875 (GKC27_06795) - 1384784..1385242 (+) 459 WP_003211884.1 TlpA disulfide reductase family protein -
  GKC27_RS06880 (GKC27_06800) rok 1385713..1386294 (+) 582 WP_003210851.1 transcriptional regulator Rok Regulator
  GKC27_RS06885 (GKC27_06805) - 1386347..1387264 (-) 918 WP_003210894.1 hypothetical protein -
  GKC27_RS06890 (GKC27_06810) - 1387349..1387930 (+) 582 WP_003210960.1 molybdenum cofactor guanylyltransferase -
  GKC27_RS06895 (GKC27_06815) - 1387961..1388977 (+) 1017 WP_003211141.1 thiazole biosynthesis adenylyltransferase ThiF -
  GKC27_RS06900 (GKC27_06820) glp 1388987..1390264 (+) 1278 WP_034619942.1 gephyrin-like molybdotransferase Glp -
  GKC27_RS06905 (GKC27_06825) mobB 1390246..1390770 (+) 525 WP_003211651.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  GKC27_RS06910 (GKC27_06830) - 1390767..1391258 (+) 492 WP_003211104.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21839.83 Da        Isoelectric Point: 9.7310

>NTDB_id=401436 GKC27_RS06880 WP_003210851.1 1385713..1386294(+) (rok) [Bacillus pumilus strain DSM 27]
MFNEREALRLRLEQLNEAEVKVIREYQIERDTIYAKLRELDRHGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNAVSTLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=401436 GKC27_RS06880 WP_003210851.1 1385713..1386294(+) (rok) [Bacillus pumilus strain DSM 27]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATACGATTTATGCAAAATTAAGAGAATTAGACCGTCATGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCTGCACAATCACAATCAAATGCTGTATCAACTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCTCGCCCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCAGCGATTAAAAGCTCTGAACTTCAAAAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
TATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.053

98.446

0.798

Multiple sequence alignment