Detailed information
Bioinformatically predicted
Overview
| Name | comK | Type | Regulator |
| Locus tag | GKC27_RS05155 | Genome accession | NZ_CP046130 |
| Coordinates | 1056694..1057272 (+) | Length | 192 a.a. |
| NCBI ID | WP_003212419.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain DSM 27 | ||
| Function | activate transcription of late competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1051694..1062272
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKC27_RS05135 (GKC27_05105) | - | 1052186..1053481 (-) | 1296 | WP_327812881.1 | globin-coupled sensor protein | - |
| GKC27_RS05140 (GKC27_05110) | - | 1053573..1055105 (-) | 1533 | WP_003211807.1 | FAD-dependent oxidoreductase | - |
| GKC27_RS05145 (GKC27_05115) | - | 1055251..1056111 (+) | 861 | WP_003211351.1 | SDR family oxidoreductase | - |
| GKC27_RS05150 (GKC27_05120) | - | 1056175..1056405 (-) | 231 | WP_003210924.1 | IDEAL domain-containing protein | - |
| GKC27_RS05155 (GKC27_05125) | comK | 1056694..1057272 (+) | 579 | WP_003212419.1 | competence protein ComK | Regulator |
| GKC27_RS05160 (GKC27_05130) | - | 1057431..1058537 (+) | 1107 | WP_034620012.1 | D-TA family PLP-dependent enzyme | - |
| GKC27_RS05165 (GKC27_05135) | - | 1058853..1059335 (+) | 483 | WP_003211388.1 | hypothetical protein | - |
| GKC27_RS05170 (GKC27_05140) | - | 1059367..1060806 (-) | 1440 | WP_003211622.1 | PLP-dependent aminotransferase family protein | - |
| GKC27_RS05175 (GKC27_05145) | - | 1060951..1062120 (+) | 1170 | WP_003212067.1 | MFS transporter | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22376.45 Da Isoelectric Point: 8.7996
>NTDB_id=401424 GKC27_RS05155 WP_003212419.1 1056694..1057272(+) (comK) [Bacillus pumilus strain DSM 27]
MSGISETPLDSYVINQTTMAILPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY
MSGISETPLDSYVINQTTMAILPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY
Nucleotide
Download Length: 579 bp
>NTDB_id=401424 GKC27_RS05155 WP_003212419.1 1056694..1057272(+) (comK) [Bacillus pumilus strain DSM 27]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGATCCTTCCGGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAACCTCTGCAAATTATTGAACGCA
GCTGCCGATTCTTCGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATATCCCACAAGCCTCCC
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGT
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGATCCTTCCGGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAACCTCTGCAAATTATTGAACGCA
GCTGCCGATTCTTCGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATATCCCACAAGCCTCCC
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGT
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comK | Bacillus subtilis subsp. subtilis str. 168 |
60.938 |
100 |
0.609 |