Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GKC27_RS04220 Genome accession   NZ_CP046130
Coordinates   882963..883754 (+) Length   263 a.a.
NCBI ID   WP_003217875.1    Uniprot ID   -
Organism   Bacillus pumilus strain DSM 27     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 877963..888754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC27_RS04185 (GKC27_04150) - 878046..878594 (+) 549 WP_003217810.1 thioredoxin family protein -
  GKC27_RS04190 (GKC27_04155) - 878931..879398 (+) 468 WP_003217856.1 DUF393 domain-containing protein -
  GKC27_RS04195 (GKC27_04160) - 879435..880691 (-) 1257 WP_003217806.1 transcriptional regulator -
  GKC27_RS04200 (GKC27_04165) - 880964..881551 (+) 588 WP_003217860.1 nitroreductase -
  GKC27_RS04205 (GKC27_04170) - 881592..881747 (-) 156 WP_003217852.1 YfhD family protein -
  GKC27_RS04210 (GKC27_04175) - 881809..881919 (-) 111 WP_017358836.1 YfhE family protein -
  GKC27_RS04215 (GKC27_04180) - 881972..882868 (-) 897 WP_003217821.1 TIGR01777 family oxidoreductase -
  GKC27_RS04220 (GKC27_04185) recX 882963..883754 (+) 792 WP_003217875.1 recombination regulator RecX Regulator
  GKC27_RS04225 (GKC27_04190) - 883758..884072 (+) 315 WP_003217779.1 YfhH family protein -
  GKC27_RS04230 (GKC27_04195) - 884238..884411 (-) 174 WP_003217811.1 YpzG family protein -
  GKC27_RS04235 (GKC27_04200) - 884437..884586 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  GKC27_RS04240 (GKC27_04205) - 884703..884975 (+) 273 WP_003217809.1 YfhJ family protein -
  GKC27_RS04245 (GKC27_04210) - 885264..886247 (+) 984 WP_003217835.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30620.00 Da        Isoelectric Point: 6.6679

>NTDB_id=401420 GKC27_RS04220 WP_003217875.1 882963..883754(+) (recX) [Bacillus pumilus strain DSM 27]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIDIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDNIEQTLSQYPDDLQLEE
AVKQVEKLVRKEKNRSAKEIEQRIKLQLQRKGFSFGIIDKALQEAYDGQEEEKEEEALLYMLEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=401420 GKC27_RS04220 WP_003217875.1 882963..883754(+) (recX) [Bacillus pumilus strain DSM 27]
ATGCCCTATATTACAAAAATCTCCGCTCAGAAAAACAATACAGAGCGGGTGAACATTTTTCTAGATGAAAAATACGCCTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCACGATTTGAAAAAAGGGAAAGAGCTGGACGAAGCAGATATCATCGACATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTA
ACCGATTATTTGACGAAAAAAGAAATCCCGGCACCTGCTATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTTGAATTTGCGGAAGCCTATGTCAGCACCCACCGTAAAACGAATAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGCTAAAGCTCAAAGGGATAGATGATGACAACATTGAACAAACACTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCTGTGAAGCAGGTTGAGAAGCTTGTGAGAAAAGAAAAAAATCGTTCCGCAAAAGAGATCGAGCAGCGCATCAAGCTGCA
GCTGCAGCGAAAGGGATTTTCGTTTGGGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCCCTCCTCTATATGCTGGAGAAGGCAAAACGCAAGGTAGGATATGACGGGTCATTTGAAAAAAAGATGAAG
GTGAAGCAATTTTTATTCAGAAAAGGCTTCGATCTCGATACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

62.738

100

0.627

Multiple sequence alignment