Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GKC25_RS11110 Genome accession   NZ_CP046128
Coordinates   2198570..2199340 (-) Length   256 a.a.
NCBI ID   WP_034661344.1    Uniprot ID   -
Organism   Bacillus pumilus strain V17C11     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2193570..2204340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS11090 (GKC25_10990) - 2193660..2194481 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  GKC25_RS11095 (GKC25_10995) - 2194507..2195145 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  GKC25_RS11100 (GKC25_11000) glyS 2195312..2197357 (-) 2046 WP_034661343.1 glycine--tRNA ligase subunit beta -
  GKC25_RS11105 (GKC25_11005) glyQ 2197350..2198237 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  GKC25_RS11110 (GKC25_11010) recO 2198570..2199340 (-) 771 WP_034661344.1 DNA repair protein RecO Machinery gene
  GKC25_RS11115 (GKC25_11015) - 2199376..2199519 (-) 144 WP_003217288.1 YqzL family protein -
  GKC25_RS11120 (GKC25_11020) era 2199668..2200573 (-) 906 WP_034661346.1 GTPase Era -
  GKC25_RS11125 (GKC25_11025) - 2200566..2200964 (-) 399 WP_034661347.1 cytidine deaminase -
  GKC25_RS11130 (GKC25_11030) - 2201078..2201464 (-) 387 WP_034661348.1 diacylglycerol kinase family protein -
  GKC25_RS11135 (GKC25_11035) ybeY 2201442..2201921 (-) 480 WP_012010615.1 rRNA maturation RNase YbeY -
  GKC25_RS11140 (GKC25_11040) - 2201922..2204009 (-) 2088 WP_045210072.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29244.92 Da        Isoelectric Point: 8.4348

>NTDB_id=401389 GKC25_RS11110 WP_034661344.1 2198570..2199340(-) (recO) [Bacillus pumilus strain V17C11]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=401389 GKC25_RS11110 WP_034661344.1 2198570..2199340(-) (recO) [Bacillus pumilus strain V17C11]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGCGTGATGGCAAGAGGTGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTTTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTCTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTAATGGGAATGAAGCCTGAACTTGATCAATGTGTCCATTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCTATTAGAGATAACGGCTTCATTTGCCAAAATTGCTTTTCTAAAGATCCGTATAAACTGCCCTTATC
CCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment