Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GKC25_RS09640 Genome accession   NZ_CP046128
Coordinates   1938531..1939142 (+) Length   203 a.a.
NCBI ID   WP_034661029.1    Uniprot ID   A0AAE4B7N2
Organism   Bacillus pumilus strain V17C11     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1933531..1944142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS09600 (GKC25_09510) - 1933693..1934811 (+) 1119 WP_223249900.1 NADH-dependent flavin oxidoreductase -
  GKC25_RS09605 (GKC25_09515) - 1934866..1935372 (-) 507 WP_060596718.1 PTS glucose transporter subunit IIA -
  GKC25_RS09610 (GKC25_09520) - 1935540..1935959 (+) 420 WP_342689776.1 Hsp20/alpha crystallin family protein -
  GKC25_RS09615 (GKC25_09525) - 1935980..1936432 (-) 453 WP_060596720.1 YppG family protein -
  GKC25_RS09620 (GKC25_09530) - 1936540..1936911 (-) 372 WP_106071648.1 YppE family protein -
  GKC25_RS09625 (GKC25_09535) - 1936970..1937203 (-) 234 WP_223249885.1 DUF5446 family protein -
  GKC25_RS09630 (GKC25_09540) sspM 1937400..1937504 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  GKC25_RS09635 (GKC25_09545) - 1937528..1938484 (-) 957 WP_106037934.1 DUF2515 domain-containing protein -
  GKC25_RS09640 (GKC25_09550) recU 1938531..1939142 (+) 612 WP_034661029.1 Holliday junction resolvase RecU Machinery gene
  GKC25_RS09645 (GKC25_09555) - 1939186..1941894 (+) 2709 WP_187703930.1 PBP1A family penicillin-binding protein -
  GKC25_RS09650 (GKC25_09560) - 1941930..1942439 (-) 510 WP_034661033.1 YpoC family protein -
  GKC25_RS09655 (GKC25_09565) nth 1942436..1943098 (-) 663 WP_342689777.1 endonuclease III -
  GKC25_RS09660 (GKC25_09570) - 1943116..1943820 (-) 705 WP_034661036.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23372.38 Da        Isoelectric Point: 8.6133

>NTDB_id=401384 GKC25_RS09640 WP_034661029.1 1938531..1939142(+) (recU) [Bacillus pumilus strain V17C11]
MIRYPNGKSYQPIQQIGTKKRFSGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=401384 GKC25_RS09640 WP_034661029.1 1938531..1939142(+) (recU) [Bacillus pumilus strain V17C11]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGATTCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGCGCTGCTGTTATCAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAATGGAGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAAGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTTCACGATCATCAAATTGAGCATATGAAACAGGTAGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGTCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGCAG
CAAAACGGCCGGAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

99.507

0.724

Multiple sequence alignment