Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GKC25_RS06655 Genome accession   NZ_CP046128
Coordinates   1346654..1346932 (+) Length   92 a.a.
NCBI ID   WP_034662686.1    Uniprot ID   A0AAE3WJG5
Organism   Bacillus pumilus strain V17C11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1341654..1351932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS06635 (GKC25_06570) - 1341968..1343587 (+) 1620 WP_034662692.1 ATP-binding cassette domain-containing protein -
  GKC25_RS06640 (GKC25_06575) - 1343824..1345056 (-) 1233 WP_095285099.1 aminopeptidase -
  GKC25_RS06645 - 1345164..1345295 (-) 132 WP_003210922.1 protein YkpC -
  GKC25_RS06650 (GKC25_06580) mreBH 1345370..1346377 (-) 1008 WP_034662688.1 rod-share determining protein MreBH -
  GKC25_RS06655 (GKC25_06585) abrB 1346654..1346932 (+) 279 WP_034662686.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GKC25_RS06660 (GKC25_06590) - 1347077..1348387 (+) 1311 WP_034662683.1 ATP-binding protein -
  GKC25_RS06665 (GKC25_06595) - 1348392..1349228 (+) 837 WP_187704479.1 gamma-glutamylcyclotransferase family protein -
  GKC25_RS06670 (GKC25_06600) - 1349266..1349934 (+) 669 WP_012009816.1 TrkA family potassium uptake protein -
  GKC25_RS06675 (GKC25_06605) ade 1350198..1351928 (+) 1731 WP_095285100.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=401378 GKC25_RS06655 WP_034662686.1 1346654..1346932(+) (abrB) [Bacillus pumilus strain V17C11]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=401378 GKC25_RS06655 WP_034662686.1 1346654..1346932(+) (abrB) [Bacillus pumilus strain V17C11]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTAAGAAGAGCACTTGA
TATTGCTATTAAAGACAGTATGGAATTTTTTATAGATGGGGAGAAAATCGTCTTGAAAAAATACCAGCCAGAGGGCGTTT
GCCTCATGACTGGTGAGATTACATCGGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554

Multiple sequence alignment