Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GKC25_RS06545 Genome accession   NZ_CP046128
Coordinates   1326478..1327059 (+) Length   193 a.a.
NCBI ID   WP_034662739.1    Uniprot ID   A0AAE3WHV4
Organism   Bacillus pumilus strain V17C11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1321478..1332059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS06515 (GKC25_06450) dapD 1321586..1322296 (+) 711 WP_034662753.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  GKC25_RS06520 (GKC25_06455) - 1322381..1323511 (+) 1131 WP_187704478.1 N-acetyldiaminopimelate deacetylase -
  GKC25_RS06525 (GKC25_06460) - 1323562..1323804 (+) 243 WP_003211408.1 YkuS family protein -
  GKC25_RS06530 (GKC25_06465) - 1323831..1324640 (-) 810 WP_034662747.1 mechanosensitive ion channel family protein -
  GKC25_RS06535 (GKC25_06470) ahpA 1324913..1325455 (+) 543 WP_034662744.1 biofilm-specific peroxidase AhpA -
  GKC25_RS06540 (GKC25_06475) - 1325538..1325996 (+) 459 WP_034662741.1 TlpA disulfide reductase family protein -
  GKC25_RS06545 (GKC25_06480) rok 1326478..1327059 (+) 582 WP_034662739.1 hypothetical protein Regulator
  GKC25_RS06550 (GKC25_06485) - 1327108..1328025 (-) 918 WP_095285092.1 sigmaE regulated sporulation protein -
  GKC25_RS06555 (GKC25_06490) - 1328110..1328691 (+) 582 WP_095285094.1 molybdenum cofactor guanylyltransferase -
  GKC25_RS06560 (GKC25_06495) - 1328721..1329737 (+) 1017 WP_034662731.1 thiazole biosynthesis adenylyltransferase ThiF -
  GKC25_RS06565 (GKC25_06500) glp 1329747..1331024 (+) 1278 WP_223249857.1 gephyrin-like molybdotransferase Glp -
  GKC25_RS06570 (GKC25_06505) mobB 1331006..1331530 (+) 525 WP_095285097.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  GKC25_RS06575 (GKC25_06510) - 1331527..1332018 (+) 492 WP_034662723.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21812.80 Da        Isoelectric Point: 9.7309

>NTDB_id=401377 GKC25_RS06545 WP_034662739.1 1326478..1327059(+) (rok) [Bacillus pumilus strain V17C11]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNPASSLGTGQLNGVPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=401377 GKC25_RS06545 WP_034662739.1 1326478..1327059(+) (rok) [Bacillus pumilus strain V17C11]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAACTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAGACGGATTCGCTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCGGCACAATCACAATCAAATCCTGCATCATCTTTAGGAACAGGACAGCTAAACGGTGTACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCCCGCCCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCGGCGATTAAAAGCTCTGAGCTTCAAAAAGAGATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
CATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

78.421

98.446

0.772

Multiple sequence alignment