Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   GKC25_RS06435 Genome accession   NZ_CP046128
Coordinates   1308603..1309064 (-) Length   153 a.a.
NCBI ID   WP_012009774.1    Uniprot ID   A0AAE4B719
Organism   Bacillus pumilus strain V17C11     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1303603..1314064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS06410 (GKC25_06350) - 1304212..1305096 (+) 885 WP_034662794.1 cation diffusion facilitator family transporter -
  GKC25_RS06415 - 1305158..1305310 (-) 153 WP_187704474.1 hypothetical protein -
  GKC25_RS06420 (GKC25_06355) - 1305612..1306151 (+) 540 WP_034662790.1 RDD family protein -
  GKC25_RS06425 (GKC25_06360) - 1306277..1307587 (+) 1311 WP_170938378.1 MFS transporter -
  GKC25_RS06430 (GKC25_06365) - 1307661..1308569 (+) 909 WP_034662787.1 chemotaxis protein -
  GKC25_RS06435 (GKC25_06370) kre 1308603..1309064 (-) 462 WP_012009774.1 YkyB family protein Regulator
  GKC25_RS06440 (GKC25_06375) - 1309781..1309996 (-) 216 WP_003211341.1 hypothetical protein -
  GKC25_RS06445 (GKC25_06380) - 1310317..1311594 (-) 1278 WP_034662784.1 MFS transporter -
  GKC25_RS06450 (GKC25_06385) - 1311668..1312165 (-) 498 WP_187704475.1 L,D-transpeptidase family protein -
  GKC25_RS06455 (GKC25_06390) - 1312322..1313179 (-) 858 WP_106037805.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17741.33 Da        Isoelectric Point: 10.2452

>NTDB_id=401376 GKC25_RS06435 WP_012009774.1 1308603..1309064(-) (kre) [Bacillus pumilus strain V17C11]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=401376 GKC25_RS06435 WP_012009774.1 1308603..1309064(-) (kre) [Bacillus pumilus strain V17C11]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACCGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAACTACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment