Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GKC25_RS04940 Genome accession   NZ_CP046128
Coordinates   1021025..1021975 (+) Length   316 a.a.
NCBI ID   WP_066031073.1    Uniprot ID   A0AAE3WJ63
Organism   Bacillus pumilus strain V17C11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1016025..1026975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS04920 (GKC25_04900) - 1017250..1017732 (+) 483 WP_060595940.1 hypothetical protein -
  GKC25_RS04925 (GKC25_04905) - 1017765..1019204 (-) 1440 WP_034663517.1 PLP-dependent aminotransferase family protein -
  GKC25_RS04930 (GKC25_04910) - 1019350..1020519 (+) 1170 WP_034663515.1 MFS transporter -
  GKC25_RS04935 (GKC25_04915) - 1020584..1020859 (+) 276 WP_034663513.1 barstar family protein -
  GKC25_RS04940 (GKC25_04920) ceuB 1021025..1021975 (+) 951 WP_066031073.1 ABC transporter permease Machinery gene
  GKC25_RS04945 (GKC25_04925) - 1021968..1022918 (+) 951 WP_034663507.1 iron chelate uptake ABC transporter family permease subunit -
  GKC25_RS04950 (GKC25_04930) - 1022909..1023667 (+) 759 WP_106037877.1 ATP-binding cassette domain-containing protein -
  GKC25_RS04955 (GKC25_04935) - 1023690..1024634 (+) 945 WP_095284990.1 siderophore ABC transporter substrate-binding protein -
  GKC25_RS04960 (GKC25_04940) - 1024775..1025731 (+) 957 WP_034663498.1 LCP family protein -
  GKC25_RS04965 (GKC25_04945) - 1025800..1026162 (-) 363 WP_034663496.1 hypothetical protein -
  GKC25_RS04970 (GKC25_04950) - 1026321..1026938 (+) 618 WP_034663493.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34927.32 Da        Isoelectric Point: 9.7476

>NTDB_id=401364 GKC25_RS04940 WP_066031073.1 1021025..1021975(+) (ceuB) [Bacillus pumilus strain V17C11]
MKLYQLSLLFVCLACVSLFVGVQDLSILQMFHLTDEQLHTLVSSRIPRLMSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILAAMLVFTHASPLMKMGIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAINLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIVGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=401364 GKC25_RS04940 WP_066031073.1 1021025..1021975(+) (ceuB) [Bacillus pumilus strain V17C11]
ATGAAGTTGTATCAATTAAGTTTATTATTTGTATGTTTGGCATGTGTATCACTGTTTGTCGGTGTACAGGATCTGTCCAT
TTTACAGATGTTTCATTTAACAGATGAACAATTACATACGTTAGTTTCAAGTCGCATCCCGCGTCTCATGAGTATTGTGC
TTGCTGGCATGAGCCTTAGTTTATGCGGCTTTATTATGCAAAGCATGACGAGGAATAAATTTGTTTCACCAACCACTGCA
GGAACGATGGATTGGGCGAAGCTTGGTATTTTAGCAGCAATGCTTGTTTTTACACATGCGAGCCCGCTCATGAAAATGGG
AATCGCGTTTCTATTTACTTTAGCTGGGAATCTTCTTTTCTTAAAAATCCTGCGGCATATTAAGGTGAACGATACGATCT
ATGTACCGTTAGTCGGCTTAATGTTTGGCGGGATTGTCAGTTCAATATCTACGTTTATAGCCTATAAATATGATCTGATC
CAAAACGTATCTGCATGGCTTCAAGGGGATTTTTCTCTTATTGTTCAGGGGCGTTATGAACTGCTCTATGTGAGTGTTCC
ACTATTGATCATCGCGTATTTATATGCTGACCGCTTTACAGTGGCGGGTATGGGTGAGAGCTTTGCCATCAACTTAGGTT
TAACGTATAAACGTGTGATGGCGGTTGGTTTGGTGATCGTTTCGATGATTACATCTGTCACCATATTAACTGTCGGAATG
TTGCCATTCCTAGGCTTAATCATTCCGAATATTGTATCGATCTACCGCGGCGATCACTTGAAAAAGAGCCTTCCTCATAC
AGCCTTACTAGGAGCCATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTGATCATTTATCCATATGAAATTTCAGTTG
GGCTCATGGTAGGCATCGTCGGAAGTGCGATCTTCCTGTACATGTTATTAAGGAGGAAACGCTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.159

95.253

0.497

Multiple sequence alignment