Detailed information
Bioinformatically predicted
Overview
| Name | comK | Type | Regulator |
| Locus tag | GKC25_RS04910 | Genome accession | NZ_CP046128 |
| Coordinates | 1015042..1015620 (+) | Length | 192 a.a. |
| NCBI ID | WP_095284986.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain V17C11 | ||
| Function | activate transcription of late competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1010042..1020620
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKC25_RS04890 (GKC25_04870) | - | 1010534..1011829 (-) | 1296 | WP_034663533.1 | globin-coupled sensor protein | - |
| GKC25_RS04895 (GKC25_04875) | - | 1011921..1013453 (-) | 1533 | WP_034663531.1 | FAD-dependent oxidoreductase | - |
| GKC25_RS04900 (GKC25_04880) | - | 1013599..1014459 (+) | 861 | WP_095284985.1 | SDR family oxidoreductase | - |
| GKC25_RS04905 (GKC25_04885) | - | 1014516..1014752 (-) | 237 | WP_008348804.1 | IDEAL domain-containing protein | - |
| GKC25_RS04910 (GKC25_04890) | comK | 1015042..1015620 (+) | 579 | WP_095284986.1 | competence protein ComK | Regulator |
| GKC25_RS04915 (GKC25_04895) | - | 1015789..1016895 (+) | 1107 | WP_034663522.1 | D-TA family PLP-dependent enzyme | - |
| GKC25_RS04920 (GKC25_04900) | - | 1017250..1017732 (+) | 483 | WP_060595940.1 | hypothetical protein | - |
| GKC25_RS04925 (GKC25_04905) | - | 1017765..1019204 (-) | 1440 | WP_034663517.1 | PLP-dependent aminotransferase family protein | - |
| GKC25_RS04930 (GKC25_04910) | - | 1019350..1020519 (+) | 1170 | WP_034663515.1 | MFS transporter | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22374.48 Da Isoelectric Point: 8.7996
>NTDB_id=401363 GKC25_RS04910 WP_095284986.1 1015042..1015620(+) (comK) [Bacillus pumilus strain V17C11]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVIGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVIGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY
Nucleotide
Download Length: 579 bp
>NTDB_id=401363 GKC25_RS04910 WP_095284986.1 1015042..1015620(+) (comK) [Bacillus pumilus strain V17C11]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGGA
GCTGCAGATTCTTCGGCTCAAGCTATGCGGGCAGAAAAGCGGGAACATATGAAGTAATAGGAATTTCTCACAAGCCTCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGA
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGGA
GCTGCAGATTCTTCGGCTCAAGCTATGCGGGCAGAAAAGCGGGAACATATGAAGTAATAGGAATTTCTCACAAGCCTCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGA
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comK | Bacillus subtilis subsp. subtilis str. 168 |
60.938 |
100 |
0.609 |