Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GKC25_RS03920 Genome accession   NZ_CP046128
Coordinates   831316..832107 (+) Length   263 a.a.
NCBI ID   WP_034665014.1    Uniprot ID   -
Organism   Bacillus pumilus strain V17C11     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 826316..837107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS03885 (GKC25_03870) - 826399..826947 (+) 549 WP_187704411.1 thioredoxin family protein -
  GKC25_RS03890 (GKC25_03875) - 827284..827751 (+) 468 WP_034665027.1 DUF393 domain-containing protein -
  GKC25_RS03895 (GKC25_03880) - 827788..829044 (-) 1257 WP_034665024.1 transcriptional regulator -
  GKC25_RS03900 (GKC25_03885) - 829318..829905 (+) 588 WP_223249939.1 nitroreductase -
  GKC25_RS03905 (GKC25_03890) - 829942..830097 (-) 156 WP_034665021.1 YfhD family protein -
  GKC25_RS03910 (GKC25_03895) - 830159..830272 (-) 114 WP_080869592.1 YfhE family protein -
  GKC25_RS03915 (GKC25_03900) - 830325..831221 (-) 897 WP_106038448.1 TIGR01777 family oxidoreductase -
  GKC25_RS03920 (GKC25_03905) recX 831316..832107 (+) 792 WP_034665014.1 recombination regulator RecX Regulator
  GKC25_RS03925 (GKC25_03910) - 832111..832425 (+) 315 WP_034665012.1 YfhH family protein -
  GKC25_RS03930 (GKC25_03915) - 832559..832732 (-) 174 WP_003217811.1 YpzG family protein -
  GKC25_RS03935 (GKC25_03920) - 832758..832907 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  GKC25_RS03940 (GKC25_03925) - 833024..833296 (+) 273 WP_034665009.1 YfhJ family protein -
  GKC25_RS03945 (GKC25_03930) - 833587..834570 (+) 984 WP_034665005.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30575.04 Da        Isoelectric Point: 6.9989

>NTDB_id=401359 GKC25_RS03920 WP_034665014.1 831316..832107(+) (recX) [Bacillus pumilus strain V17C11]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIEIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDTIEQALSQYPDDLQLEE
AVKQVLKLVRKEKNRSAKEIEQRIKLQLQRKGFSFGIIDKALQEAYDGQEEEKEEEALLYMLEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=401359 GKC25_RS03920 WP_034665014.1 831316..832107(+) (recX) [Bacillus pumilus strain V17C11]
ATGCCCTATATTACAAAAATCTCCGCTCAGAAAAACAATACGGAGCGGGTGAACATCTTTCTTGATGAAAAGTACGCCTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCACGATTTGAAAAAAGGGAAAGAGCTGGACGAAGCAGATATCATTGAAATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTG
ACCGATTATTTGACGAAAAAAGAAATTCCAGCGCCTGCTATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTCGAATTTGCGGAAGCCTATGTAAGCACCCACCGTAAAACGAACAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGTTAAAGCTTAAAGGCATAGACGATGACACCATTGAACAAGCGCTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCTGTGAAGCAGGTTCTCAAGCTTGTGAGAAAAGAAAAAAATCGTTCTGCAAAAGAGATCGAGCAGCGTATCAAGCTTCA
GCTGCAGCGAAAGGGATTTTCGTTTGGGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCCCTCCTCTATATGCTGGAGAAGGCAAAACGCAAGGTAGGATATGACGGATCATTTGAAAAGAAGATGAAA
GTGAAGCAATTTTTATTCAGAAAAGGCTTTGATCTTGATACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

63.498

100

0.635

Multiple sequence alignment