Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | GKC25_RS00585 | Genome accession | NZ_CP046128 |
| Coordinates | 106732..109167 (+) | Length | 811 a.a. |
| NCBI ID | WP_034665649.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain V17C11 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 101732..114167
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKC25_RS00570 (GKC25_00570) | - | 104603..105067 (+) | 465 | WP_003217184.1 | CtsR family transcriptional regulator | - |
| GKC25_RS00575 (GKC25_00575) | - | 105082..105639 (+) | 558 | WP_034665655.1 | UvrB/UvrC motif-containing protein | - |
| GKC25_RS00580 (GKC25_00580) | - | 105644..106735 (+) | 1092 | WP_342689881.1 | protein arginine kinase | - |
| GKC25_RS00585 (GKC25_00585) | clpC | 106732..109167 (+) | 2436 | WP_034665649.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| GKC25_RS00590 (GKC25_00590) | radA | 109261..110640 (+) | 1380 | WP_034620767.1 | DNA repair protein RadA | Machinery gene |
| GKC25_RS00595 (GKC25_00595) | disA | 110643..111722 (+) | 1080 | WP_012008686.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| GKC25_RS00600 (GKC25_00600) | - | 111876..112976 (+) | 1101 | WP_003217214.1 | PIN/TRAM domain-containing protein | - |
| GKC25_RS00605 (GKC25_00605) | ispD | 112990..113679 (+) | 690 | WP_034665643.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| GKC25_RS00610 (GKC25_00610) | ispF | 113683..114159 (+) | 477 | WP_095286191.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90039.79 Da Isoelectric Point: 6.2471
>NTDB_id=401355 GKC25_RS00585 WP_034665649.1 106732..109167(+) (clpC) [Bacillus pumilus strain V17C11]
MMFGRFTERAQKVLALAQEEAIRLGHKNIGTEHILLGLVREGEGIAAKALEALGLVSDKIQKEVESLIGRGQEVSQAIPH
YTPRAKKVTELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGASAAGSNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIHNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSVDESIQILRGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREKVEVTKKSWKEKQGQENSEVSVDDIAMV
VSSWTGVPVSKIAQTETDKLLNMEQLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDEGQNYKDMKGKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
KEIVSLMSDQLTKRLKEQDLSIELTEAAKAKIADEGVDLEYGARPLRRAIQKHVEDRLSEELLKGNIEKGQHIVLDVEDG
EIVVKTTAATN
MMFGRFTERAQKVLALAQEEAIRLGHKNIGTEHILLGLVREGEGIAAKALEALGLVSDKIQKEVESLIGRGQEVSQAIPH
YTPRAKKVTELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGASAAGSNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIHNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSVDESIQILRGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREKVEVTKKSWKEKQGQENSEVSVDDIAMV
VSSWTGVPVSKIAQTETDKLLNMEQLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDEGQNYKDMKGKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
KEIVSLMSDQLTKRLKEQDLSIELTEAAKAKIADEGVDLEYGARPLRRAIQKHVEDRLSEELLKGNIEKGQHIVLDVEDG
EIVVKTTAATN
Nucleotide
Download Length: 2436 bp
>NTDB_id=401355 GKC25_RS00585 WP_034665649.1 106732..109167(+) (clpC) [Bacillus pumilus strain V17C11]
ATGATGTTTGGAAGATTCACTGAAAGAGCTCAAAAGGTATTAGCACTTGCACAAGAAGAAGCCATTCGCCTAGGCCATAA
GAACATTGGTACTGAGCACATTTTACTTGGTCTAGTACGTGAGGGTGAGGGCATCGCCGCAAAAGCGTTAGAAGCACTGG
GTCTTGTTTCAGATAAAATCCAAAAAGAAGTCGAAAGCTTGATTGGAAGAGGGCAAGAGGTGTCTCAAGCTATTCCTCAT
TATACGCCTAGAGCGAAGAAGGTCACTGAGCTTTCAATGGATGAAGCAAGAAAGCTAGGTCATTCCTATGTAGGGACAGA
ACATATTCTATTAGGTCTTATTCGCGAGGGAGAGGGTGTAGCTGCCCGCGTTTTAAATAACCTCGGAGTGAGCTTAAATA
AAGCACGTCAGCAAGTTCTGCAGCTGCTTGGCAGCAATGAAACAGGTGCATCTGCCGCTGGCTCTAACAGCAATGCAAAT
ACACCAACATTAGATAGCTTGGCAAGAGATTTAACAGCTATTGCGAAAGAAGACAGCTTGGACCCTGTCATTGGAAGAAG
CAAAGAAATTCAGCGTGTCATTGAGGTCCTAAGCAGAAGAACAAAAAATAACCCTGTGCTGATTGGTGAGCCTGGTGTTG
GTAAAACAGCCATCGCTGAAGGTCTTGCGCAGCAAATTATTCATAATGAAGTGCCTGAAATCCTGCGCGATAAACGAGTG
ATGACACTTGATATGGGAACCGTTGTAGCGGGAACGAAATATCGTGGTGAATTTGAGGATCGTTTGAAAAAAGTCATGGA
CGAAATTCGTCAGGCAGGAAATATCATTCTCTTCATTGATGAGCTTCATACACTCATTGGTGCTGGTGGAGCAGAGGGTG
CGATTGACGCATCTAATATTCTCAAACCATCCTTAGCACGTGGAGAGCTTCAATGTATCGGGGCGACAACGTTAGATGAG
TACCGTAAATATATTGAAAAGGATGCTGCGCTTGAACGACGTTTCCAGCCAATTCAAGTGGATCAGCCATCTGTTGATGA
AAGTATTCAAATCTTAAGAGGACTTAGAGATCGTTATGAGGCACATCACCGTGTGTCCATTACGGATGAAGCGATTGAGG
CGGCGGTGAAGCTGTCTGACCGTTATATTTCTGATCGTTTCCTTCCAGATAAGGCGATTGATTTAATTGATGAGGCAGGT
TCGAAAGTCCGCTTACGTTCTTTCACAACACCGCCTAACCTAAAAGAACTAGAGCAAAAGCTCGATGAAGTACGCAAGGA
AAAGGATGCTGCTGTTCAAAGTCAGGAATTTGAAAAAGCAGCTTCTCTTCGCGATACGGAACAGCGTTTGCGTGAAAAAG
TAGAAGTCACAAAGAAATCTTGGAAAGAAAAGCAAGGACAGGAGAATTCAGAGGTATCAGTGGATGATATCGCAATGGTT
GTCTCTAGCTGGACGGGAGTGCCTGTTTCAAAAATTGCACAAACAGAAACAGATAAGCTTCTCAATATGGAACAATTGCT
CCATTCTCGTGTGATCGGGCAGGATGAAGCGGTTGTCGCTGTAGCAAAAGCTGTGAGACGTGCGCGTGCTGGCCTAAAAG
ATCCAAAACGTCCAATCGGCTCCTTTATCTTCTTAGGCCCAACAGGGGTTGGTAAAACGGAGCTTGCAAGAGCACTCGCA
GAGTCTATTTTCGGTGATGAAGAAGCGATGATCCGTATTGATATGTCTGAATACATGGAGAAACACTCTACATCTAGACT
TGTTGGGTCACCTCCAGGCTATGTTGGCTATGAAGAAGGCGGACAACTGACTGAAAAAGTGAGAAGAAAACCTTATTCTG
TTGTGCTTTTAGACGAGATTGAAAAGGCACATCCAGATGTATTCAACATTTTGCTGCAAGTGTTAGAAGATGGCCGTCTG
ACTGATTCTAAAGGGCGTACCGTTGACTTTAGAAATACGATTTTGATCATGACATCCAACGTTGGAGCTAGTGAACTGAA
GCGAAATAAATATGTTGGCTTTAACGTGCAGGATGAAGGTCAAAATTACAAGGATATGAAAGGCAAAGTGATGGGCGAGT
TGAAGCGTGCATTTAGACCAGAATTCATCAACCGTATTGATGAAATCATTGTCTTCCATTCACTTGAAAAGAAACATCTA
AAAGAGATCGTGTCTCTCATGTCTGATCAATTGACGAAACGATTAAAAGAACAAGACCTTTCAATCGAATTGACGGAAGC
AGCAAAAGCGAAGATTGCCGACGAAGGTGTAGATCTTGAGTACGGTGCGCGCCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGATCGACTTTCTGAGGAGCTTCTGAAGGGTAATATTGAAAAAGGTCAACATATCGTATTAGATGTGGAAGATGGA
GAAATTGTCGTAAAAACGACGGCTGCTACGAACTAA
ATGATGTTTGGAAGATTCACTGAAAGAGCTCAAAAGGTATTAGCACTTGCACAAGAAGAAGCCATTCGCCTAGGCCATAA
GAACATTGGTACTGAGCACATTTTACTTGGTCTAGTACGTGAGGGTGAGGGCATCGCCGCAAAAGCGTTAGAAGCACTGG
GTCTTGTTTCAGATAAAATCCAAAAAGAAGTCGAAAGCTTGATTGGAAGAGGGCAAGAGGTGTCTCAAGCTATTCCTCAT
TATACGCCTAGAGCGAAGAAGGTCACTGAGCTTTCAATGGATGAAGCAAGAAAGCTAGGTCATTCCTATGTAGGGACAGA
ACATATTCTATTAGGTCTTATTCGCGAGGGAGAGGGTGTAGCTGCCCGCGTTTTAAATAACCTCGGAGTGAGCTTAAATA
AAGCACGTCAGCAAGTTCTGCAGCTGCTTGGCAGCAATGAAACAGGTGCATCTGCCGCTGGCTCTAACAGCAATGCAAAT
ACACCAACATTAGATAGCTTGGCAAGAGATTTAACAGCTATTGCGAAAGAAGACAGCTTGGACCCTGTCATTGGAAGAAG
CAAAGAAATTCAGCGTGTCATTGAGGTCCTAAGCAGAAGAACAAAAAATAACCCTGTGCTGATTGGTGAGCCTGGTGTTG
GTAAAACAGCCATCGCTGAAGGTCTTGCGCAGCAAATTATTCATAATGAAGTGCCTGAAATCCTGCGCGATAAACGAGTG
ATGACACTTGATATGGGAACCGTTGTAGCGGGAACGAAATATCGTGGTGAATTTGAGGATCGTTTGAAAAAAGTCATGGA
CGAAATTCGTCAGGCAGGAAATATCATTCTCTTCATTGATGAGCTTCATACACTCATTGGTGCTGGTGGAGCAGAGGGTG
CGATTGACGCATCTAATATTCTCAAACCATCCTTAGCACGTGGAGAGCTTCAATGTATCGGGGCGACAACGTTAGATGAG
TACCGTAAATATATTGAAAAGGATGCTGCGCTTGAACGACGTTTCCAGCCAATTCAAGTGGATCAGCCATCTGTTGATGA
AAGTATTCAAATCTTAAGAGGACTTAGAGATCGTTATGAGGCACATCACCGTGTGTCCATTACGGATGAAGCGATTGAGG
CGGCGGTGAAGCTGTCTGACCGTTATATTTCTGATCGTTTCCTTCCAGATAAGGCGATTGATTTAATTGATGAGGCAGGT
TCGAAAGTCCGCTTACGTTCTTTCACAACACCGCCTAACCTAAAAGAACTAGAGCAAAAGCTCGATGAAGTACGCAAGGA
AAAGGATGCTGCTGTTCAAAGTCAGGAATTTGAAAAAGCAGCTTCTCTTCGCGATACGGAACAGCGTTTGCGTGAAAAAG
TAGAAGTCACAAAGAAATCTTGGAAAGAAAAGCAAGGACAGGAGAATTCAGAGGTATCAGTGGATGATATCGCAATGGTT
GTCTCTAGCTGGACGGGAGTGCCTGTTTCAAAAATTGCACAAACAGAAACAGATAAGCTTCTCAATATGGAACAATTGCT
CCATTCTCGTGTGATCGGGCAGGATGAAGCGGTTGTCGCTGTAGCAAAAGCTGTGAGACGTGCGCGTGCTGGCCTAAAAG
ATCCAAAACGTCCAATCGGCTCCTTTATCTTCTTAGGCCCAACAGGGGTTGGTAAAACGGAGCTTGCAAGAGCACTCGCA
GAGTCTATTTTCGGTGATGAAGAAGCGATGATCCGTATTGATATGTCTGAATACATGGAGAAACACTCTACATCTAGACT
TGTTGGGTCACCTCCAGGCTATGTTGGCTATGAAGAAGGCGGACAACTGACTGAAAAAGTGAGAAGAAAACCTTATTCTG
TTGTGCTTTTAGACGAGATTGAAAAGGCACATCCAGATGTATTCAACATTTTGCTGCAAGTGTTAGAAGATGGCCGTCTG
ACTGATTCTAAAGGGCGTACCGTTGACTTTAGAAATACGATTTTGATCATGACATCCAACGTTGGAGCTAGTGAACTGAA
GCGAAATAAATATGTTGGCTTTAACGTGCAGGATGAAGGTCAAAATTACAAGGATATGAAAGGCAAAGTGATGGGCGAGT
TGAAGCGTGCATTTAGACCAGAATTCATCAACCGTATTGATGAAATCATTGTCTTCCATTCACTTGAAAAGAAACATCTA
AAAGAGATCGTGTCTCTCATGTCTGATCAATTGACGAAACGATTAAAAGAACAAGACCTTTCAATCGAATTGACGGAAGC
AGCAAAAGCGAAGATTGCCGACGAAGGTGTAGATCTTGAGTACGGTGCGCGCCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGATCGACTTTCTGAGGAGCTTCTGAAGGGTAATATTGAAAAAGGTCAACATATCGTATTAGATGTGGAAGATGGA
GAAATTGTCGTAAAAACGACGGCTGCTACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
96.054 |
100 |
0.961 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.259 |
99.877 |
0.492 |
| clpC | Streptococcus thermophilus LMD-9 |
46.247 |
100 |
0.471 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.884 |
100 |
0.467 |
| clpC | Streptococcus pneumoniae Rx1 |
45.802 |
99.877 |
0.457 |
| clpC | Streptococcus pneumoniae D39 |
45.802 |
99.877 |
0.457 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.802 |
99.877 |
0.457 |
| clpC | Streptococcus mutans UA159 |
43.675 |
100 |
0.451 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.369 |
87.916 |
0.434 |
| clpE | Streptococcus mutans UA159 |
53.478 |
79.778 |
0.427 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.713 |
79.531 |
0.419 |
| clpE | Streptococcus pneumoniae Rx1 |
52.713 |
79.531 |
0.419 |
| clpE | Streptococcus pneumoniae D39 |
52.713 |
79.531 |
0.419 |
| clpE | Streptococcus pneumoniae R6 |
52.713 |
79.531 |
0.419 |