Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GKC25_RS00255 Genome accession   NZ_CP046128
Coordinates   47056..47346 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain V17C11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42056..52346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS00215 (GKC25_00215) - 42091..42420 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  GKC25_RS00220 (GKC25_00220) - 42433..42873 (+) 441 WP_034665673.1 DUF327 family protein -
  GKC25_RS00225 (GKC25_00225) holB 42885..43874 (+) 990 WP_034665677.1 DNA polymerase III subunit delta' -
  GKC25_RS00230 (GKC25_00230) - 43877..44704 (+) 828 WP_012008643.1 stage 0 sporulation family protein -
  GKC25_RS00235 (GKC25_00235) yabA 44719..45072 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  GKC25_RS00240 (GKC25_00240) - 45128..45871 (+) 744 WP_034665680.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GKC25_RS00245 (GKC25_00245) - 45858..46154 (+) 297 WP_003217970.1 GIY-YIG nuclease family protein -
  GKC25_RS00250 (GKC25_00250) rsmI 46132..47010 (+) 879 WP_034665683.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GKC25_RS00255 (GKC25_00255) abrB 47056..47346 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GKC25_RS00260 (GKC25_00260) metG 47867..49864 (+) 1998 WP_342689875.1 methionine--tRNA ligase -
  GKC25_RS00265 (GKC25_00265) - 49947..50714 (+) 768 WP_034665688.1 TatD family hydrolase -
  GKC25_RS00270 (GKC25_00270) - 50959..52161 (+) 1203 WP_342689876.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=401354 GKC25_RS00255 WP_087975202.1 47056..47346(-) (abrB) [Bacillus pumilus strain V17C11]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=401354 GKC25_RS00255 WP_087975202.1 47056..47346(-) (abrB) [Bacillus pumilus strain V17C11]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGGAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment