Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   GKC22_RS10905 Genome accession   NZ_CP046127
Coordinates   2172227..2173297 (-) Length   356 a.a.
NCBI ID   WP_034661296.1    Uniprot ID   -
Organism   Bacillus pumilus strain P48C1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2167227..2178297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC22_RS10855 (GKC22_10785) - 2167321..2167893 (-) 573 WP_034662000.1 signal peptidase I -
  GKC22_RS10860 (GKC22_10790) tapA 2167945..2168472 (-) 528 WP_034661284.1 amyloid fiber anchoring/assembly protein TapA -
  GKC22_RS10865 (GKC22_10795) - 2168772..2169050 (+) 279 WP_223249903.1 DUF3889 domain-containing protein -
  GKC22_RS10870 (GKC22_10800) - 2169084..2169278 (-) 195 WP_024718846.1 YqzE family protein -
  GKC22_RS10875 (GKC22_10805) comGG 2169337..2169720 (-) 384 WP_034661288.1 competence type IV pilus minor pilin ComGG -
  GKC22_RS10880 (GKC22_10810) comGF 2169717..2170217 (-) 501 WP_095285387.1 competence type IV pilus minor pilin ComGF -
  GKC22_RS10885 (GKC22_10815) comGE 2170156..2170473 (-) 318 WP_034661291.1 competence type IV pilus minor pilin ComGE -
  GKC22_RS10890 (GKC22_10820) comGD 2170457..2170903 (-) 447 WP_034661293.1 competence type IV pilus minor pilin ComGD -
  GKC22_RS10895 (GKC22_10825) comGC 2170896..2171189 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene
  GKC22_RS10900 (GKC22_10830) comGB 2171206..2172246 (-) 1041 WP_034661294.1 competence type IV pilus assembly protein ComGB -
  GKC22_RS10905 (GKC22_10835) comGA 2172227..2173297 (-) 1071 WP_034661296.1 competence type IV pilus ATPase ComGA Machinery gene
  GKC22_RS10910 (GKC22_10840) - 2173475..2174347 (-) 873 WP_341031810.1 STAS domain-containing protein -
  GKC22_RS10920 (GKC22_10850) - 2174572..2174952 (-) 381 WP_034661298.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  GKC22_RS10925 (GKC22_10855) - 2175166..2175408 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  GKC22_RS10930 (GKC22_10860) - 2175457..2176095 (-) 639 WP_342689108.1 MBL fold metallo-hydrolase -
  GKC22_RS10935 (GKC22_10865) - 2176253..2176426 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  GKC22_RS10940 (GKC22_10870) - 2176450..2176764 (-) 315 WP_034662003.1 MTH1187 family thiamine-binding protein -
  GKC22_RS10945 (GKC22_10875) - 2176842..2178095 (-) 1254 WP_080869494.1 MFS transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40265.61 Da        Isoelectric Point: 9.0692

>NTDB_id=401327 GKC22_RS10905 WP_034661296.1 2172227..2173297(-) (comGA) [Bacillus pumilus strain P48C1]
MYGIEYLGQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRSGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASTRLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDLIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGETCQLYCKLNRPVRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=401327 GKC22_RS10905 WP_034661296.1 2172227..2173297(-) (comGA) [Bacillus pumilus strain P48C1]
TTGTATGGTATTGAATATTTGGGACAAGAGCTGCTAGAAGAAGCATGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
AAAAGAAAAGGAAGCGTCGGTATCTTTCCGCGTAGACTCAGATTTAATTCAGCAGCGAACCATTGATAAAAAAAGCGGCG
AGCGGCTCATTGCTCATTTTAAATTTTTATCATCCATGGATATAGGGGAAAAAAGGAGGCCGCAAAATGGGTCACTAGCT
GTGATGCTAAGAAGCGGCCAGGTGTTTATTCGGATGTCTACCTTACCAACTGTAAATGATGAGAGCTTAGTGATTAGAAT
ATTGCCGCAGGATCATGTTCCAAAAATAAAACATCTGTCACTATTTCCGAAAGCCTCCACCAGGTTATTATCATTTTTGA
ATCATTCGCATGGGCTGATTTTATTTACCGGTCCAACAAATTCAGGGAAAACAACAACCCTTTATTCATTAATCCAGTTT
GCAAAAAAGAATTTCAACCGAAATATTATTACACTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGTTACAGGTTCA
AGTGAATGAAAAAGCCGGCATCACATATGCCGCAGGATTACGTGCTATTTTAAGACATGATCCAGATCTTATTGTGCTAG
GAGAAATAAGAGATGCCGAAACGGCCCGAACGGCAATTAGAGCAGCACTGACAGGCCATTTAGTGATGAGTACGCTCCAT
GCGAAAAATGCAAAAGGAGCCCTTTATCGTATGCTTGAATTTGGTGTCACAATGAATGAACTCGAACAAACGATGGTTGC
GATTGCTGCGCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAAACATGTCAGCTTTACTGTAAATTAAATCGAC
CGGTCAGACGAACAAATGTATTTGAACTGCTGTTCGGAAAGGAGCTTGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACACTGCAAAGATTAATTCGTAAAGGAGTGGCACTAGGCTATTTATCGAAAAACACCTATCA
TCGCTGGGTTTATGAAGAAGCAAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.124

99.438

0.638

Multiple sequence alignment