Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | GKC22_RS10845 | Genome accession | NZ_CP046127 |
| Coordinates | 2166060..2166395 (+) | Length | 111 a.a. |
| NCBI ID | WP_095285385.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain P48C1 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2161060..2171395
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKC22_RS10825 (GKC22_10755) | gcvT | 2161538..2162635 (-) | 1098 | WP_106031002.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| GKC22_RS10830 (GKC22_10760) | - | 2163197..2164867 (+) | 1671 | WP_342689107.1 | SNF2-related protein | - |
| GKC22_RS10835 (GKC22_10765) | - | 2164882..2165679 (+) | 798 | WP_034661279.1 | YqhG family protein | - |
| GKC22_RS10840 (GKC22_10770) | - | 2165862..2166026 (+) | 165 | WP_003217357.1 | anti-repressor SinI family protein | - |
| GKC22_RS10845 (GKC22_10775) | sinR | 2166060..2166395 (+) | 336 | WP_095285385.1 | helix-turn-helix domain-containing protein | Regulator |
| GKC22_RS10850 (GKC22_10780) | - | 2166463..2167263 (-) | 801 | WP_034661283.1 | TasA family protein | - |
| GKC22_RS10855 (GKC22_10785) | - | 2167321..2167893 (-) | 573 | WP_034662000.1 | signal peptidase I | - |
| GKC22_RS10860 (GKC22_10790) | tapA | 2167945..2168472 (-) | 528 | WP_034661284.1 | amyloid fiber anchoring/assembly protein TapA | - |
| GKC22_RS10865 (GKC22_10795) | - | 2168772..2169050 (+) | 279 | WP_223249903.1 | DUF3889 domain-containing protein | - |
| GKC22_RS10870 (GKC22_10800) | - | 2169084..2169278 (-) | 195 | WP_024718846.1 | YqzE family protein | - |
| GKC22_RS10875 (GKC22_10805) | comGG | 2169337..2169720 (-) | 384 | WP_034661288.1 | competence type IV pilus minor pilin ComGG | - |
| GKC22_RS10880 (GKC22_10810) | comGF | 2169717..2170217 (-) | 501 | WP_095285387.1 | competence type IV pilus minor pilin ComGF | - |
| GKC22_RS10885 (GKC22_10815) | comGE | 2170156..2170473 (-) | 318 | WP_034661291.1 | competence type IV pilus minor pilin ComGE | - |
| GKC22_RS10890 (GKC22_10820) | comGD | 2170457..2170903 (-) | 447 | WP_034661293.1 | competence type IV pilus minor pilin ComGD | - |
| GKC22_RS10895 (GKC22_10825) | comGC | 2170896..2171189 (-) | 294 | WP_003217322.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12959.51 Da Isoelectric Point: 4.9956
>NTDB_id=401325 GKC22_RS10845 WP_095285385.1 2166060..2166395(+) (sinR) [Bacillus pumilus strain P48C1]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKNQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKNQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=401325 GKC22_RS10845 WP_095285385.1 2166060..2166395(+) (sinR) [Bacillus pumilus strain P48C1]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCGGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
TCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCGGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
TCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
93.694 |
100 |
0.937 |