Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GKC22_RS07580 Genome accession   NZ_CP046127
Coordinates   1536145..1537047 (+) Length   300 a.a.
NCBI ID   WP_342689641.1    Uniprot ID   -
Organism   Bacillus pumilus strain P48C1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1531145..1542047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC22_RS07560 (GKC22_07505) - 1531811..1533547 (+) 1737 WP_095285165.1 glycosyltransferase -
  GKC22_RS07565 (GKC22_07510) - 1533544..1533819 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  GKC22_RS07570 (GKC22_07515) sucC 1533996..1535156 (+) 1161 WP_012009945.1 ADP-forming succinate--CoA ligase subunit beta -
  GKC22_RS07575 (GKC22_07520) sucD 1535179..1536081 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  GKC22_RS07580 (GKC22_07525) dprA 1536145..1537047 (+) 903 WP_342689641.1 DNA-processing protein DprA Machinery gene
  GKC22_RS07585 (GKC22_07530) topA 1537241..1539316 (+) 2076 WP_187704499.1 type I DNA topoisomerase -
  GKC22_RS07590 (GKC22_07535) trmFO 1539387..1540691 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GKC22_RS07595 (GKC22_07540) xerC 1540754..1541671 (+) 918 WP_342689642.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34072.34 Da        Isoelectric Point: 8.5955

>NTDB_id=401317 GKC22_RS07580 WP_342689641.1 1536145..1537047(+) (dprA) [Bacillus pumilus strain P48C1]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETQHFKQDRSLQSIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWTIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=401317 GKC22_RS07580 WP_342689641.1 1536145..1537047(+) (dprA) [Bacillus pumilus strain P48C1]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACAACATTTCAAACAGGATCGATCATTACAATCGATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATACCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGACGATTGTCAGTGGCTTAGCAAAAGGAATCGATGGACTTGCACAT
AAAGAATGCATTCGGAATAAAGGGAAAACCATCGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTCAATACATGGGAGAGCATCATTTGCTTTTATCCGAGCATCCGCCTTATGTGAAACCAGAAAAGTGGCATT
TTCCAATGAGGAATCGTTTAATTAGTGCGCTGACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCGCTC
ATTACCGCGTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTCGCAGGATCTATCTTTGATCCTAATTCCACAGG
ACCAGCCAGACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Legionella pneumophila strain ERS1305867

38.361

100

0.39

Multiple sequence alignment