Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GKC22_RS06750 Genome accession   NZ_CP046127
Coordinates   1371606..1371884 (+) Length   92 a.a.
NCBI ID   WP_034662686.1    Uniprot ID   A0AAE3WJG5
Organism   Bacillus pumilus strain P48C1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1366606..1376884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC22_RS06730 (GKC22_06680) - 1366925..1368544 (+) 1620 WP_034662692.1 ATP-binding cassette domain-containing protein -
  GKC22_RS06735 (GKC22_06685) - 1368776..1370008 (-) 1233 WP_342689628.1 aminopeptidase -
  GKC22_RS06740 - 1370116..1370247 (-) 132 WP_003210922.1 protein YkpC -
  GKC22_RS06745 (GKC22_06690) mreBH 1370322..1371329 (-) 1008 WP_060596160.1 rod-share determining protein MreBH -
  GKC22_RS06750 (GKC22_06695) abrB 1371606..1371884 (+) 279 WP_034662686.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GKC22_RS06755 (GKC22_06700) - 1372029..1373339 (+) 1311 WP_034662683.1 ATP-binding protein -
  GKC22_RS06760 (GKC22_06705) - 1373344..1374180 (+) 837 WP_034663868.1 gamma-glutamylcyclotransferase family protein -
  GKC22_RS06765 (GKC22_06710) - 1374218..1374886 (+) 669 WP_034662681.1 TrkA family potassium uptake protein -
  GKC22_RS06770 (GKC22_06715) ade 1375149..1376879 (+) 1731 WP_106030786.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=401316 GKC22_RS06750 WP_034662686.1 1371606..1371884(+) (abrB) [Bacillus pumilus strain P48C1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=401316 GKC22_RS06750 WP_034662686.1 1371606..1371884(+) (abrB) [Bacillus pumilus strain P48C1]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTAAGAAGAGCACTTGA
TATTGCTATTAAAGACAGTATGGAATTTTTTATAGATGGGGAGAAAATCGTCTTGAAAAAATACCAGCCAGAGGGCGTTT
GCCTCATGACTGGTGAGATTACATCGGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554

Multiple sequence alignment