Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   GKC22_RS06640 Genome accession   NZ_CP046127
Coordinates   1351434..1352015 (+) Length   193 a.a.
NCBI ID   WP_034662739.1    Uniprot ID   A0AAE3WHV4
Organism   Bacillus pumilus strain P48C1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1346434..1357015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC22_RS06610 (GKC22_06560) dapD 1346546..1347256 (+) 711 WP_034662753.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  GKC22_RS06615 (GKC22_06565) - 1347341..1348471 (+) 1131 WP_187704478.1 N-acetyldiaminopimelate deacetylase -
  GKC22_RS06620 (GKC22_06570) - 1348522..1348764 (+) 243 WP_003211408.1 YkuS family protein -
  GKC22_RS06625 (GKC22_06575) - 1348791..1349600 (-) 810 WP_034662747.1 mechanosensitive ion channel family protein -
  GKC22_RS06630 (GKC22_06580) ahpA 1349873..1350415 (+) 543 WP_034662744.1 biofilm-specific peroxidase AhpA -
  GKC22_RS06635 (GKC22_06585) - 1350498..1350956 (+) 459 WP_034662741.1 TlpA disulfide reductase family protein -
  GKC22_RS06640 (GKC22_06590) rok 1351434..1352015 (+) 582 WP_034662739.1 hypothetical protein Regulator
  GKC22_RS06645 (GKC22_06595) - 1352064..1352981 (-) 918 WP_342689622.1 sigmaE regulated sporulation protein -
  GKC22_RS06650 (GKC22_06600) - 1353066..1353647 (+) 582 WP_034662733.1 molybdenum cofactor guanylyltransferase -
  GKC22_RS06655 (GKC22_06605) - 1353677..1354693 (+) 1017 WP_342689623.1 thiazole biosynthesis adenylyltransferase ThiF -
  GKC22_RS06660 (GKC22_06610) glp 1354703..1355980 (+) 1278 WP_342689624.1 gephyrin-like molybdotransferase Glp -
  GKC22_RS06665 (GKC22_06615) mobB 1355962..1356486 (+) 525 WP_034662725.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  GKC22_RS06670 (GKC22_06620) - 1356483..1356974 (+) 492 WP_106041755.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21812.80 Da        Isoelectric Point: 9.7309

>NTDB_id=401315 GKC22_RS06640 WP_034662739.1 1351434..1352015(+) (rok) [Bacillus pumilus strain P48C1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNPASSLGTGQLNGVPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=401315 GKC22_RS06640 WP_034662739.1 1351434..1352015(+) (rok) [Bacillus pumilus strain P48C1]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAACTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAGACGGATTCGCTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCGGCACAATCACAATCAAATCCTGCATCATCTTTAGGAACAGGACAGCTAAACGGTGTACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCCCGCCCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCGGCGATTAAAAGCTCTGAGCTTCAAAAAGAGATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
CATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

78.421

98.446

0.772

Multiple sequence alignment