Detailed information NTG0401314

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUK75_RS06740
• Genome accession: NZ_CP054792
• Coordinates: 1437969..1438973 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SE5431
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1432969..1443973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUK75_RS06710 (HUK75_06710)	fghA	1433061..1433912 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
HUK75_RS06715 (HUK75_06715)	ispF	1433983..1434456 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUK75_RS06720 (HUK75_06720)	truD	1434453..1435520 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
HUK75_RS06725 (HUK75_06725)	surE	1435508..1436257 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HUK75_RS06730 (HUK75_06730)	-	1436290..1436925 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HUK75_RS06735 (HUK75_06735)	-	1436971..1437864 (+)	894	WP_023436003.1	peptidoglycan DD-metalloendopeptidase family protein	-
HUK75_RS06740 (HUK75_06740)	rpoS	1437969..1438973 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HUK75_RS06745 (HUK75_06745)	fdxA	1439400..1439723 (-)	324	WP_003092272.1	ferredoxin FdxA	-
HUK75_RS06750 (HUK75_06750)	mutS	1439790..1442357 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
HUK75_RS06755 (HUK75_06755)	-	1442483..1443490 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=401314 HUK75_RS06740 WP_003113871.1 1437969..1438973(+) (rpoS) [Pseudomonas aeruginosa strain SE5431]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=401314 HUK75_RS06740 WP_003113871.1 1437969..1438973(+) (rpoS) [Pseudomonas aeruginosa strain SE5431]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653