Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   GKC22_RS06355 Genome accession   NZ_CP046127
Coordinates   1296029..1298131 (-) Length   700 a.a.
NCBI ID   WP_095285069.1    Uniprot ID   -
Organism   Bacillus pumilus strain P48C1     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291029..1303131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC22_RS06330 (GKC22_06290) - 1291617..1291859 (+) 243 WP_034662891.1 aspartyl-phosphate phosphatase Spo0E family protein -
  GKC22_RS06335 (GKC22_06295) - 1291906..1293411 (-) 1506 WP_034662888.1 ATP-binding protein -
  GKC22_RS06340 (GKC22_06300) - 1293617..1294072 (+) 456 WP_034662884.1 MarR family transcriptional regulator -
  GKC22_RS06345 (GKC22_06305) motB 1294102..1294866 (-) 765 WP_060596120.1 flagellar motor protein MotB -
  GKC22_RS06350 (GKC22_06310) motA 1294859..1295653 (-) 795 WP_034662877.1 flagellar motor stator protein MotA -
  GKC22_RS06355 (GKC22_06315) clpC 1296029..1298131 (-) 2103 WP_095285069.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  GKC22_RS06360 (GKC22_06320) - 1298375..1299418 (+) 1044 WP_095285070.1 hypothetical protein -
  GKC22_RS06365 (GKC22_06325) queC 1299694..1300350 (+) 657 WP_024424683.1 7-cyano-7-deazaguanine synthase QueC -
  GKC22_RS06370 (GKC22_06330) queD 1300351..1300791 (+) 441 WP_095285072.1 6-carboxytetrahydropterin synthase QueD -
  GKC22_RS06375 (GKC22_06335) queE 1300784..1301515 (+) 732 WP_095285074.1 7-carboxy-7-deazaguanine synthase QueE -
  GKC22_RS06380 (GKC22_06340) queF 1301531..1302028 (+) 498 WP_003211403.1 preQ(1) synthase -
  GKC22_RS06385 (GKC22_06345) - 1302300..1302518 (+) 219 WP_034662856.1 hypothetical protein -
  GKC22_RS06390 (GKC22_06350) - 1302642..1302830 (-) 189 WP_003211747.1 DUF2187 family protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77950.48 Da        Isoelectric Point: 5.0006

>NTDB_id=401313 GKC22_RS06355 WP_095285069.1 1296029..1298131(-) (clpC) [Bacillus pumilus strain P48C1]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEQAGHAQSGEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIEILKGIQDKYESYHGVTYSDEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLTEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEAIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSEQLKEQHLTVHVT
KEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKLSGFTVDVEDDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=401313 GKC22_RS06355 WP_095285069.1 1296029..1298131(-) (clpC) [Bacillus pumilus strain P48C1]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTGAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGGGGAAGCTCAT
TCTTCTCTGAGCAAGCAGGACATGCACAAAGCGGAGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAACTTGGCCGGAAT
TTAACAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAAATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTGATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGACTCGCAC
TGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCCCTTGTAGCG
AATACAGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAGCTGCAAAGCCGTAAAAATATTATCTT
ATTTGTAGATGAAATCCATCTTCTTGTAGGCGCAGGATCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTTCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCCGCCCTT
GAACGACGCTTCCAGCCCGTCATTGTAGATGAACCAACACAAGATGAAGCGATCGAGATTTTAAAAGGCATTCAAGATAA
GTACGAAAGTTATCATGGCGTCACTTATTCAGACGAAGCTATTCAAGCGTGTGTTCAATTATCTTCCCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAACTAACGAATCGTCTGACAGAAATCGCTGCTGAAAAACAAGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCGAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAGAACAAAACAAATGACAAAGAACATGTCGTCACAG
CAGAAGCCATTCAAGCCATTGTGGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGCTTAAAAGCACGGGTGATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCTGTGAAAAG
AAGCAGAGCCGGCTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTATTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCAAAAACGCTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATCCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCCAAGCTCATTGGTTCTCCTCCTGGTTATGTTGGACATGATGAAGCGGGTCAGCTGACGGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCTGATGTGCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACGGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTCAGCGCCTATTTCAAGCCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATAGAGATG
ATTTAGTGAAGATTGTGGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAACATTTAACAGTCCATGTGACA
AAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCATCCTGCATTTGGTGCTCGTCCACTGAGAAGAACCATTCAAGA
GCATGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAGCTTTCAGGATTTACTGTAGATGTTGAAGATGACG
AAATTGTAGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

AAA lid domain (AAA_lid_9)

(253-353)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.64

100

0.597
  clpE Streptococcus mutans UA159

57.202

100

0.59
  clpE Streptococcus pneumoniae Rx1

55.525

100

0.574
  clpE Streptococcus pneumoniae D39

55.525

100

0.574
  clpE Streptococcus pneumoniae R6

55.525

100

0.574
  clpE Streptococcus pneumoniae TIGR4

55.525

100

0.574
  clpC Bacillus subtilis subsp. subtilis str. 168

53.433

95.714

0.511
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.077

92.857

0.437
  clpC Streptococcus thermophilus LMD-9

46.384

90.857

0.421
  clpC Streptococcus thermophilus LMG 18311

46.226

90.857

0.42
  clpC Streptococcus mutans UA159

43.865

93.143

0.409
  clpC Streptococcus pneumoniae TIGR4

45.064

89.714

0.404
  clpC Streptococcus pneumoniae Rx1

45.265

89

0.403
  clpC Streptococcus pneumoniae D39

45.265

89

0.403

Multiple sequence alignment