Detailed information
Bioinformatically predicted
Overview
| Name | comK | Type | Regulator |
| Locus tag | GKC22_RS05020 | Genome accession | NZ_CP046127 |
| Coordinates | 1041552..1042130 (+) | Length | 192 a.a. |
| NCBI ID | WP_095284986.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain P48C1 | ||
| Function | activate transcription of late competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1036552..1047130
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKC22_RS05000 (GKC22_04985) | - | 1037044..1038339 (-) | 1296 | WP_034663533.1 | globin-coupled sensor protein | - |
| GKC22_RS05005 (GKC22_04990) | - | 1038431..1039963 (-) | 1533 | WP_342689579.1 | FAD-dependent oxidoreductase | - |
| GKC22_RS05010 (GKC22_04995) | - | 1040109..1040969 (+) | 861 | WP_342689580.1 | SDR family oxidoreductase | - |
| GKC22_RS05015 (GKC22_05000) | - | 1041026..1041262 (-) | 237 | WP_008348804.1 | IDEAL domain-containing protein | - |
| GKC22_RS05020 (GKC22_05005) | comK | 1041552..1042130 (+) | 579 | WP_095284986.1 | competence protein ComK | Regulator |
| GKC22_RS05025 (GKC22_05010) | - | 1042299..1043405 (+) | 1107 | WP_034663522.1 | D-TA family PLP-dependent enzyme | - |
| GKC22_RS05030 (GKC22_05015) | - | 1043760..1044242 (+) | 483 | WP_060595940.1 | hypothetical protein | - |
| GKC22_RS05035 (GKC22_05020) | - | 1044275..1045714 (-) | 1440 | WP_034663517.1 | PLP-dependent aminotransferase family protein | - |
| GKC22_RS05040 (GKC22_05025) | - | 1045860..1047029 (+) | 1170 | WP_034663515.1 | MFS transporter | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22374.48 Da Isoelectric Point: 8.7996
>NTDB_id=401301 GKC22_RS05020 WP_095284986.1 1041552..1042130(+) (comK) [Bacillus pumilus strain P48C1]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVIGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVIGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY
Nucleotide
Download Length: 579 bp
>NTDB_id=401301 GKC22_RS05020 WP_095284986.1 1041552..1042130(+) (comK) [Bacillus pumilus strain P48C1]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGGA
GCTGCAGATTCTTCGGCTCAAGCTATGCGGGCAGAAAAGCGGGAACATATGAAGTAATAGGAATTTCTCACAAGCCTCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGA
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGGA
GCTGCAGATTCTTCGGCTCAAGCTATGCGGGCAGAAAAGCGGGAACATATGAAGTAATAGGAATTTCTCACAAGCCTCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGA
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comK | Bacillus subtilis subsp. subtilis str. 168 |
60.938 |
100 |
0.609 |