Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GKC22_RS04030 Genome accession   NZ_CP046127
Coordinates   857705..858496 (+) Length   263 a.a.
NCBI ID   WP_342689548.1    Uniprot ID   -
Organism   Bacillus pumilus strain P48C1     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 859044..860396 857705..858496 flank 548


Gene organization within MGE regions


Location: 857705..860396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC22_RS04030 (GKC22_04015) recX 857705..858496 (+) 792 WP_342689548.1 recombination regulator RecX Regulator
  GKC22_RS04035 (GKC22_04020) - 858500..858814 (+) 315 WP_034665012.1 YfhH family protein -
  GKC22_RS04040 (GKC22_04025) - 859044..860396 (+) 1353 WP_106038609.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30647.06 Da        Isoelectric Point: 6.3770

>NTDB_id=401297 GKC22_RS04030 WP_342689548.1 857705..858496(+) (recX) [Bacillus pumilus strain P48C1]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIEIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDTIEQALSQYPDDLQLEE
AVNQVLKLVRKEKNRSAKEIEQRIKLQLQRKGFSFAIIDKALQEAYDGQEEEKEEEALLYMLEKAKRKVEYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=401297 GKC22_RS04030 WP_342689548.1 857705..858496(+) (recX) [Bacillus pumilus strain P48C1]
ATGCCCTATATTACAAAAATCTCCGCTCAGAAAAACAATACGGAGCGGGTGAACATCTTTCTTGATGAAAAGTACGCCTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCACGATTTGAAAAAAGGGAAAGAGCTGGACGAAGCAGATATCATTGAAATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAGCAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTG
ACCGATTATTTGACGAAAAAAGAAATTCCAGCGCCTGCTATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTTGAATTTGCGGAAGCCTATGTAAGCACCCACCGTAAAACGAACAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGTTAAAGCTTAAAGGCATAGACGATGACACCATTGAACAAGCGCTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCCGTCAATCAGGTTCTCAAGCTTGTGAGAAAAGAAAAGAATCGTTCTGCAAAAGAGATCGAGCAGCGCATCAAGCTTCA
GCTGCAGCGAAAGGGATTTTCGTTTGCGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCCCTCCTCTATATGCTGGAGAAGGCAAAACGCAAGGTAGAATATGACGGATCATTTGAAAAGAAGATGAAA
GTGAAGCAATTTTTATTCAGAAAAGGCTTTGATCTCGATACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

63.118

100

0.631

Multiple sequence alignment