Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GKC22_RS00260 Genome accession   NZ_CP046127
Coordinates   48607..48897 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain P48C1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 43607..53897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC22_RS00220 (GKC22_00220) - 43642..43971 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  GKC22_RS00225 (GKC22_00225) - 43984..44424 (+) 441 WP_034665673.1 DUF327 family protein -
  GKC22_RS00230 (GKC22_00230) holB 44436..45425 (+) 990 WP_034665677.1 DNA polymerase III subunit delta' -
  GKC22_RS00235 (GKC22_00235) - 45428..46255 (+) 828 WP_012008643.1 stage 0 sporulation family protein -
  GKC22_RS00240 (GKC22_00240) yabA 46270..46623 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  GKC22_RS00245 (GKC22_00245) - 46679..47422 (+) 744 WP_034665680.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GKC22_RS00250 (GKC22_00250) - 47409..47705 (+) 297 WP_003217970.1 GIY-YIG nuclease family protein -
  GKC22_RS00255 (GKC22_00255) rsmI 47683..48561 (+) 879 WP_342689360.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GKC22_RS00260 (GKC22_00260) abrB 48607..48897 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GKC22_RS00265 (GKC22_00265) metG 49418..51415 (+) 1998 WP_034665685.1 methionine--tRNA ligase -
  GKC22_RS00270 (GKC22_00270) - 51498..52265 (+) 768 WP_034665688.1 TatD family hydrolase -
  GKC22_RS00275 (GKC22_00275) - 52510..53712 (+) 1203 WP_106038597.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=401292 GKC22_RS00260 WP_087975202.1 48607..48897(-) (abrB) [Bacillus pumilus strain P48C1]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=401292 GKC22_RS00260 WP_087975202.1 48607..48897(-) (abrB) [Bacillus pumilus strain P48C1]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment