Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GFU50_RS06820 Genome accession   NZ_CP046123
Coordinates   1420945..1422618 (+) Length   557 a.a.
NCBI ID   WP_154694391.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain EC291     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1415945..1427618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFU50_RS06790 (GFU50_06790) - 1416265..1417116 (+) 852 WP_005235351.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  GFU50_RS06795 (GFU50_06795) xseA 1417117..1418469 (+) 1353 WP_154694390.1 exodeoxyribonuclease VII large subunit -
  GFU50_RS06800 (GFU50_06800) - 1418450..1418671 (+) 222 WP_121261672.1 exodeoxyribonuclease VII small subunit -
  GFU50_RS06805 (GFU50_06805) - 1418668..1419564 (+) 897 WP_121261670.1 polyprenyl synthetase family protein -
  GFU50_RS06810 (GFU50_06810) - 1419561..1420382 (+) 822 WP_005225776.1 TlyA family RNA methyltransferase -
  GFU50_RS06815 (GFU50_06815) argR 1420480..1420929 (+) 450 WP_005225777.1 arginine repressor -
  GFU50_RS06820 (GFU50_06820) recN 1420945..1422618 (+) 1674 WP_154694391.1 DNA repair protein RecN Machinery gene
  GFU50_RS06825 (GFU50_06825) - 1422714..1423445 (+) 732 WP_194185961.1 alpha/beta hydrolase -
  GFU50_RS06830 (GFU50_06830) - 1423846..1424700 (+) 855 WP_010748000.1 phosphate ABC transporter substrate-binding protein PstS -
  GFU50_RS06835 (GFU50_06835) pstC 1424798..1425718 (+) 921 WP_005225781.1 phosphate ABC transporter permease subunit PstC -
  GFU50_RS06840 (GFU50_06840) pstA 1425718..1426602 (+) 885 WP_005225782.1 phosphate ABC transporter permease PstA -
  GFU50_RS06845 (GFU50_06845) pstB 1426616..1427422 (+) 807 WP_005225783.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62561.66 Da        Isoelectric Point: 4.5155

>NTDB_id=401263 GFU50_RS06820 WP_154694391.1 1420945..1422618(+) (recN) [Enterococcus casseliflavus strain EC291]
MLLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSSDYLRQGAEKCRLEGIFEWPNQQEFKELT
ADLGIDEEEVLIVQRDISQSGKTICRVNGRTVTLSVLRQIGLFLVDIQGQNEHQELLQPEKHLALMDGFGDDAFKAELAS
YRQAYQAYRSLEKHVRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEEQLIDEREKLTNYQKIVDALGQSYGALSAEE
VNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYYLLQDAATDISRQVDNLELDEGRLEEVISRLETIRQLKRKYGESI
PVILAYYDEISKEISESAYTEGQLEQLEEELAQKAEAVWQLAEALHVKRRELAHRLEKEIVQELKELYMDHAQFEVRFAS
GSKQLSSSGFDTVEFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKIAK
IAANSQVLCITHLPQVAAVADNQYFIEKAIQEGRTETHVRKLSEEERVAEIARMLSGAEITDLTIEHARELLALAHR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=401263 GFU50_RS06820 WP_154694391.1 1420945..1422618(+) (recN) [Enterococcus casseliflavus strain EC291]
ATGCTTTTAGAATTGTCGATCCAAAATTTTGCGATTATCTCCAACTTGCACCTGTCTTTTCATGAGGGAATGACGGCTCT
AACAGGTGAAACAGGTGCTGGGAAATCAATCATTATCGATGCGATGGGCTTACTAGCAGGTGGCAGAGGATCCAGTGACT
ATTTGCGTCAAGGCGCAGAAAAATGCCGTTTGGAAGGGATTTTTGAATGGCCGAATCAGCAGGAGTTCAAAGAATTGACC
GCAGATCTGGGTATTGATGAAGAGGAAGTTCTGATCGTACAACGGGATATCTCTCAATCGGGTAAAACTATTTGTCGTGT
TAATGGTCGAACTGTTACCTTGTCGGTTTTGCGCCAAATCGGCTTGTTTTTAGTTGATATCCAAGGACAAAATGAGCATC
AAGAGCTGCTGCAGCCAGAAAAACATTTGGCGTTGATGGATGGTTTTGGAGATGATGCCTTTAAAGCGGAACTTGCAAGT
TACCGTCAAGCCTATCAAGCCTATCGCTCCTTAGAAAAACATGTGCGGACCATTCAAGAAAATGAACAGCTCTATGTGCA
GCGAATGGACATGCTGCGTTTTCAACAAGAAGAGATCGCCCAAGCGGAATTGATGGAAAATGAAGAAGAGCAGCTGATCG
ATGAACGAGAAAAACTGACCAATTATCAAAAAATCGTGGATGCTCTAGGGCAAAGCTATGGCGCTCTATCCGCCGAAGAA
GTTAATAGCCTAGATGGAGTCAGTGTGGCATTATCAGAGATCCAGTCGATCGCCCATCTTGATCCTGCGTATGAAAAAAT
CAGTGAAGCGATCCAAAGTGCGTATTACTTGTTGCAAGATGCAGCCACTGATATTTCGCGGCAAGTCGACAACCTTGAAT
TAGATGAAGGCCGACTGGAAGAAGTCATTTCACGGCTGGAAACGATTCGTCAATTGAAGCGCAAATACGGGGAATCGATT
CCTGTGATCCTTGCTTATTATGACGAGATCAGCAAAGAAATCAGCGAATCAGCCTATACGGAAGGTCAGTTGGAGCAATT
AGAAGAAGAGCTTGCCCAAAAAGCTGAAGCAGTTTGGCAGCTGGCGGAAGCCTTGCACGTCAAACGACGTGAACTGGCTC
ATCGTTTAGAAAAAGAAATCGTTCAAGAGTTAAAAGAGCTGTATATGGACCACGCGCAATTTGAAGTACGGTTTGCATCT
GGCTCAAAACAATTAAGCAGCAGCGGCTTTGATACCGTGGAGTTTTATTTGACCACCAACCCCGGTGAAGGCATGAAACC
GTTAGTGCGAGTTGCTTCTGGAGGAGAGCTTTCCCGAATCTTATTAGCGCTTAAATCGATTTTCTCCCGCAAGCAAGGAA
TCACTAGTATTGTCTTTGATGAGGTGGATACTGGGGTCAGTGGCCGAGTAGCTCAGGCGATCGCCGAAAAAATCGCCAAG
ATCGCTGCGAATTCGCAAGTCTTGTGTATCACCCACTTGCCGCAAGTAGCGGCTGTGGCGGACAATCAATATTTTATCGA
AAAAGCAATTCAAGAAGGTCGGACAGAAACCCATGTCCGTAAATTATCAGAAGAAGAACGAGTGGCTGAGATCGCCCGTA
TGCTCTCAGGTGCAGAAATCACCGATTTAACAATTGAACATGCACGAGAACTATTGGCGCTGGCTCACCGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.544

100

0.487

Multiple sequence alignment