Detailed information NTG0401215

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUK74_RS07005
• Genome accession: NZ_CP054791
• Coordinates: 1489648..1490652 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SE5430
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1484648..1495652

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUK74_RS06975 (HUK74_06965)	fghA	1484740..1485591 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
HUK74_RS06980 (HUK74_06970)	ispF	1485662..1486135 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUK74_RS06985 (HUK74_06975)	truD	1486132..1487199 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
HUK74_RS06990 (HUK74_06980)	surE	1487187..1487936 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HUK74_RS06995 (HUK74_06985)	-	1487969..1488604 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HUK74_RS07000 (HUK74_06990)	-	1488650..1489543 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
HUK74_RS07005 (HUK74_06995)	rpoS	1489648..1490652 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HUK74_RS07010 (HUK74_07000)	-	1490877..1492076 (+)	1200	WP_001062689.1	tyrosine-type recombinase/integrase	-
HUK74_RS07015 (HUK74_07005)	-	1492073..1493137 (+)	1065	WP_003092331.1	PDDEXK nuclease domain-containing protein	-
HUK74_RS07020 (HUK74_07010)	radC	1493489..1493998 (+)	510	WP_003092330.1	RadC family protein	Machinery gene

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=401215 HUK74_RS07005 WP_003113871.1 1489648..1490652(+) (rpoS) [Pseudomonas aeruginosa strain SE5430]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=401215 HUK74_RS07005 WP_003113871.1 1489648..1490652(+) (rpoS) [Pseudomonas aeruginosa strain SE5430]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653