Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GJ694_RS08245 Genome accession   NZ_CP046116
Coordinates   1764625..1765251 (+) Length   208 a.a.
NCBI ID   WP_038985580.1    Uniprot ID   -
Organism   Enterobacter cloacae strain CBG15936     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759625..1770251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJ694_RS08225 (GJ694_08225) - 1760025..1761785 (-) 1761 WP_038985584.1 AAA family ATPase -
  GJ694_RS08230 (GJ694_08230) matP 1761972..1762424 (+) 453 WP_013097258.1 macrodomain Ter protein MatP -
  GJ694_RS08235 (GJ694_08235) ompA 1762488..1763543 (-) 1056 WP_028027914.1 porin OmpA -
  GJ694_RS08240 (GJ694_08240) sulA 1763898..1764407 (-) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  GJ694_RS08245 (GJ694_08245) sxy/tfoX 1764625..1765251 (+) 627 WP_038985580.1 TfoX/Sxy family DNA transformation protein Regulator
  GJ694_RS08250 (GJ694_08250) yccS 1765208..1767370 (-) 2163 WP_014831317.1 YccS family putative transporter -
  GJ694_RS08255 (GJ694_08255) - 1767390..1767836 (-) 447 WP_013097253.1 YccF domain-containing protein -
  GJ694_RS08260 (GJ694_08260) helD 1767959..1770013 (+) 2055 WP_038985577.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24060.61 Da        Isoelectric Point: 9.3869

>NTDB_id=401184 GJ694_RS08245 WP_038985580.1 1764625..1765251(+) (sxy/tfoX) [Enterobacter cloacae strain CBG15936]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYYVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=401184 GJ694_RS08245 WP_038985580.1 1764625..1765251(+) (sxy/tfoX) [Enterobacter cloacae strain CBG15936]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTATGTAAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGGCCGATCCTTCTCAAC
TATTATCGTGTGGATGACGGTCTCTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATACAACGCTACCAGCGAAACCGGCTAAAGGATCTGCCCAACCTGACTTTTCAGCTGGAAGTGCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCGCTCAGTATCAAAGTACTGTTTGCCCTGGAAGGGGCGATTGAAGGCCTGCATGAAGCGGCACTCCCGGCGGAAAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.635

97.596

0.562

Multiple sequence alignment