Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SPNINV200_RS13220 Genome accession   NC_017593
Coordinates   1389673..1390395 (-) Length   240 a.a.
NCBI ID   WP_001010368.1    Uniprot ID   -
Organism   Streptococcus pneumoniae INV200     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384673..1395395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPNINV200_RS07265 (SPNINV200_13620) - 1387247..1388413 (-) 1167 WP_000521363.1 MalY/PatB family protein -
  SPNINV200_RS07270 (SPNINV200_13630) - 1388421..1389515 (-) 1095 WP_000031960.1 cystathionine gamma-synthase -
  SPNINV200_RS13220 rcrP 1389673..1390395 (-) 723 WP_001010368.1 ABC transporter ATP-binding protein Regulator
  SPNINV200_RS07280 - 1390582..1391348 (-) 767 Protein_1372 ABC transporter ATP-binding protein -
  SPNINV200_RS07285 (SPNINV200_13650) amiA 1391520..1393478 (-) 1959 WP_000748873.1 peptide ABC transporter substrate-binding protein Regulator
  SPNINV200_RS07290 (SPNINV200_13660) - 1393682..1395304 (-) 1623 WP_000017797.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27287.14 Da        Isoelectric Point: 5.0452

>NTDB_id=40117 SPNINV200_RS13220 WP_001010368.1 1389673..1390395(-) (rcrP) [Streptococcus pneumoniae INV200]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLEQFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDESTANLDADSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEERKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=40117 SPNINV200_RS13220 WP_001010368.1 1389673..1390395(-) (rcrP) [Streptococcus pneumoniae INV200]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCAGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAGAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAATCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGAGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363

Multiple sequence alignment