Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GKQ56_RS11100 Genome accession   NZ_CP046111
Coordinates   2311521..2313194 (-) Length   557 a.a.
NCBI ID   WP_002387037.1    Uniprot ID   -
Organism   Enterococcus faecalis strain 111540047-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2306521..2318194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKQ56_RS11070 (GKQ56_11450) ftsL 2307535..2307942 (-) 408 WP_002358883.1 cell division protein FtsL -
  GKQ56_RS11075 (GKQ56_11455) rsmH 2307959..2308915 (-) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  GKQ56_RS11080 (GKQ56_11460) mraZ 2308930..2309415 (-) 486 WP_002403788.1 division/cell wall cluster transcriptional repressor MraZ -
  GKQ56_RS11085 (GKQ56_11465) - 2309649..2310041 (-) 393 WP_002383401.1 DUF3397 domain-containing protein -
  GKQ56_RS11090 (GKQ56_11470) - 2310286..2311251 (+) 966 WP_002383400.1 magnesium transporter CorA family protein -
  GKQ56_RS11095 - 2311319..2311429 (+) 111 WP_002383399.1 DUF4044 domain-containing protein -
  GKQ56_RS11100 (GKQ56_11480) recN 2311521..2313194 (-) 1674 WP_002387037.1 DNA repair protein RecN Machinery gene
  GKQ56_RS11105 (GKQ56_11485) - 2313212..2313661 (-) 450 WP_002358881.1 arginine repressor -
  GKQ56_RS11110 (GKQ56_11490) - 2313793..2314653 (-) 861 WP_010784577.1 hypothetical protein -
  GKQ56_RS11115 (GKQ56_11495) - 2314658..2315215 (-) 558 WP_002361405.1 matrixin family metalloprotease -
  GKQ56_RS11120 (GKQ56_11500) - 2315581..2316396 (-) 816 WP_002378128.1 TlyA family RNA methyltransferase -
  GKQ56_RS11125 (GKQ56_11505) - 2316410..2317291 (-) 882 WP_002355879.1 polyprenyl synthetase family protein -
  GKQ56_RS11130 (GKQ56_11510) - 2317291..2317521 (-) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62631.04 Da        Isoelectric Point: 4.5772

>NTDB_id=401050 GKQ56_RS11100 WP_002387037.1 2311521..2313194(-) (recN) [Enterococcus faecalis strain 111540047-1]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKKLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=401050 GKQ56_RS11100 WP_002387037.1 2311521..2313194(-) (recN) [Enterococcus faecalis strain 111540047-1]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGAAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGCGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCGGCTCATCAACAAGCGTTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGGCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.168

100

0.496

Multiple sequence alignment